PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G48120.4
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 454aa    MW: 49220.2 Da    PI: 6.8305
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G48120.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.66e-125624491374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                      l++lLl+cA a ++g l +a+a+L+++  la+pdgd+mqR+aa f+eALa+r +r +++l++al  p++++  + +e++aa++ f +++P+l++
  OGLUM01G48120.4  62 LIHLLLNCAAAAAAGRLDAANAALEHIASLAAPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRASP--TPAEVAAARRHFLDLCPFLRL 153
                      689************************************************************94444444..6899999************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      +  +aNq Ilea+e+e+ vH+iD++    +QW+ Ll+ La+Rpegpp+lR+T v++    +ke l +t+  L+k Ae+l+vpf+fn+ v++rl+
  OGLUM01G48120.4 154 AGAAANQSILEAMESEKIVHVIDLGGADATQWLELLHLLAARPEGPPHLRLTSVHE----HKELLTQTAMALTKEAERLDVPFQFNP-VVSRLD 242
                      ********************************************************....9**************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrll....................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                      +l++e+Lrvk+gEala++++lqlh ll                    +   +++s+ d++L ++++lsPkv+vv+eqea+hn++ + erf+eal
  OGLUM01G48120.4 243 ALDVESLRVKTGEALAICSSLQLHCLLasdddaaavaggdkerrspeSGLSPSTSRADAFLGALWGLSPKVMVVAEQEASHNAAGLTERFVEAL 336
                      ******************************************9997522233344789************************************ PP

             GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                      +yy+alfd+le++++r s er+ vEr llg+ei+n+vac g errerhe+le+W +rle aGF+ vpls++a  qa+++ +  + dg++v ee+
  OGLUM01G48120.4 337 NYYAALFDCLEVGAARGSVERARVERWLLGEEIKNIVACDGGERRERHERLERWARRLEGAGFGRVPLSYYALLQARRVAQGLGCDGFKVREEK 430
                      ********************************************************************************************** PP

             GRAS 356 gslvlgWkdrpLvsvSaWr 374
                      g ++l+W+dr+L+svSaWr
  OGLUM01G48120.4 431 GNFFLCWQDRALFSVSAWR 449
                      ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.50436429IPR005202Transcription factor GRAS
PfamPF035142.1E-12262449IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MNARAGAALA RLMVQDEGSS SSVTSSPLHN FSNMPLHPAA AASPTPPWMV RELRSDERGL  60
CLIHLLLNCA AAAAAGRLDA ANAALEHIAS LAAPDGDAMQ RVAAAFAEAL ARRALRAWPG  120
LCRALLLPRA SPTPAEVAAA RRHFLDLCPF LRLAGAAANQ SILEAMESEK IVHVIDLGGA  180
DATQWLELLH LLAARPEGPP HLRLTSVHEH KELLTQTAMA LTKEAERLDV PFQFNPVVSR  240
LDALDVESLR VKTGEALAIC SSLQLHCLLA SDDDAAAVAG GDKERRSPES GLSPSTSRAD  300
AFLGALWGLS PKVMVVAEQE ASHNAAGLTE RFVEALNYYA ALFDCLEVGA ARGSVERARV  360
ERWLLGEEIK NIVACDGGER RERHERLERW ARRLEGAGFG RVPLSYYALL QARRVAQGLG  420
CDGFKVREEK GNFFLCWQDR ALFSVSAWRG RRFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-65464512380Protein SCARECROW
5b3h_D4e-65464512380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875400.0AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence.
GenBankAP0032590.0AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610769.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR81e-171SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0D9YK000.0A0A0D9YK00_9ORYZ; Uncharacterized protein
STRINGOGLUM01G48120.40.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-128scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]