PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G47350.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1168aa MW: 127886 Da PI: 8.6751

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G47350.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.3	4.6e-07	74	130	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++lF+++ ++ ++e +e++++ g+t +qV+ +F +R++ +k OGLUM01G47350.1 74 KKPRDLLNPKAVKSMQSLFAMKDTIGKKETREISASFGVTVTQVREFFASQRTRVRK 130 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.718	71	131	IPR001356	Homeobox domain
SMART	SM00389	0.0028	73	135	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.0E-5	74	137	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-4	74	130	IPR001356	Homeobox domain
CDD	cd00086	3.91E-4	74	130	No hit	No description
SuperFamily	SSF46689	8.13E-6	74	133	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1168 aa Download sequence Send to blast
MELVPFKPEA GALVESGGGA HGDSIPAMVA AQQELLHAQV DQLQLLVVAQ CRLTGVNPLA 60 QEMAAGALSI KIGKKPRDLL NPKAVKSMQS LFAMKDTIGK KETREISASF GVTVTQVREF 120 FASQRTRVRK FVRLSREKAL RIESSKAPDN VCSISTEQTP VDIEAHAQVI EPLRTLEPLE 180 AQQISLPHLV VPQISLQLSV VPQSCAIPVA PTGVMQPTEA KTNPDPIQKE TKQEEVAGVE 240 SEDKKFLESI FVLMRKENTF SGQVKLMESI LQINNVTVLS WFLTMGGLAI VSTWLGQAVT 300 EEQTTVILVV FKVLLHLPLH KALPAHMSTV LQTINRLRFY RTQDISSKAR NLLSRLSKVL 360 VRSQALKKSQ KDLICKQRIS EILRDESWKS EVDITEDILA LTDDASESRM PEPRKTPLLL 420 TASADESNKK SSLQTKSKEK RKVLLVEHPN RKAAGKNVNP VRSTSTNNSR PLSADDIQKA 480 KMRAMFMQEK YGKVDTSKVT EKPHMMEIQK PSGLVDSNVP LVPRTPLTSI IKQPVDPSPS 540 TSKQSTLSPP DKPEIAVSSK LIVAAKENFI EKLDSKRVIW QIPPEVWIDP AWSLGAGENS 600 KEFEVQTQRN RREKETFYAS LKDIPLNPKG PWDVEMDFDD SLTPEIPIEQ PPDADAMETD 660 SVSTAPPNIV VPVVDKQIGS TSSVSPAVAA GANGAASEPD LELLAVLLKN PQLVFALTSN 720 QGGTLPSEQT VALLDMLKQT GLGLSELVNS LANNSGVQKE PESGPEAIPA SLPSPTPPKD 780 LIARDGWSSE FPSQVRTQNL QHAHLPNRAN APPVASSVQQ SFSNVVSSLP SQPYASASAL 840 PAQTRTNMTS LPQSMISVNP STQHVAPMNN LLSRATVHQH TQSYFLTSDP VAVAVHHQPA 900 VNKLAHEVQS ISHPAVSHSS VAESHASYTS YTWQSSVATI AATGRNATPD RWAAPARTTN 960 SFNAAPSNSN HVTYPNQNAY SNHSTQATTY NSYGSAPVSS HSLHPGQGLD RNGYTHAAEY 1020 QTTTARDALR RNSRSPELGA GAVYGSSSQG YVPEPSRQWN YGQQSYNPEP SSRQWSSGQQ 1080 SYNTVTAEPS RQWSSGQQSY SNPAEPSRQW SSSAHAQPSY NPEPSRPWNS GHQSQNPEAS 1140 RQWSHHHGKQ ERYNPTDGRN SYDQHWRR

Sequence ? help Back to Top

Protein Sequence Length: 1168 aa Download sequence Send to blast

MELVPFKPEA GALVESGGGA HGDSIPAMVA AQQELLHAQV DQLQLLVVAQ CRLTGVNPLA  60
QEMAAGALSI KIGKKPRDLL NPKAVKSMQS LFAMKDTIGK KETREISASF GVTVTQVREF  120
FASQRTRVRK FVRLSREKAL RIESSKAPDN VCSISTEQTP VDIEAHAQVI EPLRTLEPLE  180
AQQISLPHLV VPQISLQLSV VPQSCAIPVA PTGVMQPTEA KTNPDPIQKE TKQEEVAGVE  240
SEDKKFLESI FVLMRKENTF SGQVKLMESI LQINNVTVLS WFLTMGGLAI VSTWLGQAVT  300
EEQTTVILVV FKVLLHLPLH KALPAHMSTV LQTINRLRFY RTQDISSKAR NLLSRLSKVL  360
VRSQALKKSQ KDLICKQRIS EILRDESWKS EVDITEDILA LTDDASESRM PEPRKTPLLL  420
TASADESNKK SSLQTKSKEK RKVLLVEHPN RKAAGKNVNP VRSTSTNNSR PLSADDIQKA  480
KMRAMFMQEK YGKVDTSKVT EKPHMMEIQK PSGLVDSNVP LVPRTPLTSI IKQPVDPSPS  540
TSKQSTLSPP DKPEIAVSSK LIVAAKENFI EKLDSKRVIW QIPPEVWIDP AWSLGAGENS  600
KEFEVQTQRN RREKETFYAS LKDIPLNPKG PWDVEMDFDD SLTPEIPIEQ PPDADAMETD  660
SVSTAPPNIV VPVVDKQIGS TSSVSPAVAA GANGAASEPD LELLAVLLKN PQLVFALTSN  720
QGGTLPSEQT VALLDMLKQT GLGLSELVNS LANNSGVQKE PESGPEAIPA SLPSPTPPKD  780
LIARDGWSSE FPSQVRTQNL QHAHLPNRAN APPVASSVQQ SFSNVVSSLP SQPYASASAL  840
PAQTRTNMTS LPQSMISVNP STQHVAPMNN LLSRATVHQH TQSYFLTSDP VAVAVHHQPA  900
VNKLAHEVQS ISHPAVSHSS VAESHASYTS YTWQSSVATI AATGRNATPD RWAAPARTTN  960
SFNAAPSNSN HVTYPNQNAY SNHSTQATTY NSYGSAPVSS HSLHPGQGLD RNGYTHAAEY  1020
QTTTARDALR RNSRSPELGA GAVYGSSSQG YVPEPSRQWN YGQQSYNPEP SSRQWSSGQQ  1080
SYNTVTAEPS RQWSSGQQSY SNPAEPSRQW SSSAHAQPSY NPEPSRPWNS GHQSQNPEAS  1140
RQWSHHHGKQ ERYNPTDGRN SYDQHWRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066698	0.0	AK066698.1 Oryza sativa Japonica Group cDNA clone:J013073H18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620702.1	0.0	homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0D9YJP5	0.0	A0A0D9YJP5_9ORYZ; Uncharacterized protein
STRING	OGLUM01G47350.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-148	HB-other family protein