PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G46800.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 307aa    MW: 32423 Da    PI: 8.8617
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G46800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.25.3e-2432103171
         trihelix   1 rWtkqevlaLiearremeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                      rWt++e+l+L++arr me+r rr+ +    +W++vs+++r++g+er+p qC+++w nl+++ kki ++ek+ 
  OGLUM01G46800.1  32 RWTRHETLVLLQARRAMEHRGRRSPQPvRLKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKNL 103
                      8**********************97764889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.982590IPR017877Myb-like domain
SuperFamilySSF466895.47E-52992IPR009057Homeodomain-like
PfamPF138373.3E-1032100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSGAANATSP AAGAGTPRSR XGAGTPRSRL PRWTRHETLV LLQARRAMEH RGRRSPQPVR  60
LKWAAVSAYC RRHGVERGPM QCRKRWGNLS WDLKKIVAWE KNLAAVVSGA GDNAVAAGEG  120
EGEAPPPPRL ESFWDMRGEQ RRARQLPSSF DREVYDALVG GHGAAPPSDF GEDLADGDGV  180
DADELPPPPL MVMPISATVS AKRGGAASDK NSTSQHDGGG GGGLKDSEAT YGAGVGGEEG  240
TTTATATATT TSIGRQVIEA LERGNRMLGD QLEAQRAAWD AEREQRVALL AAVDKLAGAV  300
CRIADKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629515.10.0trihelix transcription factor ASR3
TrEMBLA0A0D9YJH10.0A0A0D9YJH1_9ORYZ; Uncharacterized protein
STRINGOGLUM01G46800.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-43Trihelix family protein