PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G45230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 482aa MW: 52709.2 Da PI: 7.0797 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32 | 1.6e-10 | 123 | 175 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT...SEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst...gklyeys 50 k ien+ +r+ tf +Rr g+ K + +LC++e+++i +++ g++ +++ OGLUM01G45230.1 123 KLIENEKKRKATFKNRRDGLKQKVSQFATLCGVEALLICVAPAvagGEVTTWP 175 569*************************************9854448888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.01E-15 | 115 | 193 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.325 | 115 | 163 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.2E-8 | 115 | 176 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.36E-16 | 117 | 195 | No hit | No description |
Pfam | PF00319 | 1.0E-13 | 125 | 174 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MVRTPTIIPL RPNYSPPGDG AAFRREPATY SRFPPAAARN ECDLTFGQER KREGMKGKPP 60 ISRKIIYNHR DFVSMGERFV ALCFIFTMSP LIDATLFVRV VLDFVRREET RRDEMPRTKL 120 VLKLIENEKK RKATFKNRRD GLKQKVSQFA TLCGVEALLI CVAPAVAGGE VTTWPPDRAA 180 VLDLIARLRA TPPEKIRQLH NTQSLLRDDL DKQQRLLLKV QKCGTDDVLT PWHCSLYDLS 240 LDGLNALHDT LSETLDRAHR RMAALGGGHG HVHDDAASSS AFSVPAPAPH AVALPDNAFD 300 FPFAPSNTGP VVGAHYFYPL HDTLPLPPPL PQQVPGQHPP CIAYQMPPPP CLAYQMPPPP 360 PSLAAAPFDQ CMSATGFMDS NPYATHIMHG GSTAAGLLDD HGQIFSAGAG YDDDDILGHG 420 FGFAAGTGYD LDPRMATADV WPMNTLNNIP NDGGIGFQLQ NDLKWMLPGG SNGSNLQGGF 480 QI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003380 | 0.0 | AP003380.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0497A05. | |||
GenBank | AP006531 | 0.0 | AP006531.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1417F08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9YIV5 | 0.0 | A0A0D9YIV5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G45230.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14351 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 8e-12 | M-type_MADS family protein |