PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM01G45160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 673aa MW: 75319.9 Da PI: 6.338 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.1 | 9.1e-15 | 82 | 169 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk++ +++++ + +p +fa+++ + + + led g +W+v+l +++ ++ GWk+Fv ++++ +g+f+vF+ + rs f +v OGLUM01G45160.1 82 FFKIM--VGYFSEN-MDIPLPFARTITDMT--GSNVYLEDAYGLRWRVRL--YLHDDVLSFGHGWKNFVLDHDISVGEFLVFRQIARSVF--TV 166 66666..5566666.9**********6443..337***************..999999*************************9998999..88 PP EEE CS B3 95 kvf 97 ++f OGLUM01G45160.1 167 QIF 169 877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.77E-22 | 76 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-19 | 77 | 172 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.957 | 79 | 172 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.98E-17 | 80 | 169 | No hit | No description |
SMART | SM01019 | 9.0E-13 | 82 | 172 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.3E-12 | 82 | 169 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.32 | 576 | 671 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-12 | 576 | 669 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-14 | 577 | 667 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.98E-10 | 577 | 669 | No hit | No description |
SMART | SM01019 | 0.0035 | 579 | 671 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-7 | 604 | 667 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 673 aa Download sequence Send to blast |
MVELIKVPKI EQEEGNADSH GKEKADVVHE EKTEKVKRRR KRVSDPQRKK ACVDCTKRCI 60 RIHGMASSSS EKARPTPTLP SFFKIMVGYF SENMDIPLPF ARTITDMTGS NVYLEDAYGL 120 RWRVRLYLHD DVLSFGHGWK NFVLDHDISV GEFLVFRQIA RSVFTVQIFA ISACERIHLC 180 ERNKRQSRKR KPGRKTGYPA NNQMVKVSSK DVVKRRKKQR TDEQIYDLDP RQHDMPVRVC 240 IDSGSELRCS ESSVKELDAA PDKSHAVVQV PATECNADPS YNAAGMKTIK NLEAIGASSS 300 TKDVTWDANK SEDYPSFSYP ESSNVMTADK ESERSHQDRP MQLYCELGLE DGNAETDNCE 360 NSNVLENAEL RTPLAMMDLN EVGIDDIFLS ADIYEFDSDF CSPEAFSVDV NTEGLVANGR 420 TPGDCFGMPE TSRCLENKQM TDVPRTSTDD GSIAVHGIDI NALPSNTYPD IGQGNTYPDI 480 DAAPDDCKKD KDVLHSECNK VAQKAHSSVK QDITKDGPRQ IAAEIMSSGP KTCELTYVRK 540 NSVQPGTSSV SQWNNSKGQE SGGTKSCVVL AVAANSKKFC ITIPPPDQTW LELPRRLPVL 600 PRTKKQARKI LILKDPSMRL WPVLYQCTPK FNGFIAGWAD ISRENNLREG DTCEFELCSN 660 SELSFQVLVP NLQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 37 | 49 | RRRKRVSDPQRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK063530 | 0.0 | AK063530.1 Oryza sativa Japonica Group cDNA clone:001-117-B02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645658.1 | 0.0 | B3 domain-containing protein Os01g0905400 | ||||
Swissprot | Q5N6V0 | 0.0 | Y1054_ORYSJ; B3 domain-containing protein Os01g0905400 | ||||
TrEMBL | A0A0D9YIU6 | 0.0 | A0A0D9YIU6_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G45160.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11461 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24700.1 | 3e-11 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|