PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G42170.3

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 574aa MW: 63543.2 Da PI: 7.0224

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G42170.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.8e-10	242	272	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ OGLUM01G42170.3 242 AKTERRLAQNREAARKSRLRKKAYVQNLETS 272 799*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-5	239	301	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	241	285	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-7	242	274	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-7	243	294	No hit	No description
SuperFamily	SSF57959	4.69E-7	243	289	No hit	No description
PROSITE pattern	PS00036	0	246	261	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-29	337	411	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MKGGYKEWIE LVVIMVQGEE SSWRMAASTH HERAIPLNQA LAYGVQAHAS PSVAAAPPAS 60 FLDFQPAAAA AAYFGELEEA LIHGANAGGV VDPGMIRADV HSKSAAAAAT AGYLAARPPT 120 LEIFPSWPMR QQQQLHSGNS QSVGSTTDSS SAQNTMPQME LVSPASIRAS SEHQHQQQQP 180 GQEVMMVTTD DYSYKPGLAA ASPSFQQQHQ LQHHQQQQLH GGGDHDKRKH GSTRKDGKSV 240 DAKTERRLAQ NREAARKSRL RKKAYVQNLE TSRVRLQQIE QELQRARSQQ QLQPASLQLA 300 DEGVPRSSHH GAVKSFAGAA MFDMEYARWL DDDSKRLTDL RGGLQAHLLD TNLGLIVEEC 360 MQHYDELFQL KAALARSDVF HLLTGTWATP AERCFLWMGG FRPSDLLKIL IQQLDPLTEQ 420 QMLGIYSLQQ SSEQAEEALA QGLQQLHQSL ADTVAAGTLN DGPGVPNYMS LMAIALDKLA 480 SLESFYQQVT NLANVQADNL RQQTLHQLRR ILTTRQAARC FLSIGEYYRR LRALSNLWSS 540 RPRENFIGTE SVSPTGTELQ PMHNQPQQNQ YSGF

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MKGGYKEWIE LVVIMVQGEE SSWRMAASTH HERAIPLNQA LAYGVQAHAS PSVAAAPPAS  60
FLDFQPAAAA AAYFGELEEA LIHGANAGGV VDPGMIRADV HSKSAAAAAT AGYLAARPPT  120
LEIFPSWPMR QQQQLHSGNS QSVGSTTDSS SAQNTMPQME LVSPASIRAS SEHQHQQQQP  180
GQEVMMVTTD DYSYKPGLAA ASPSFQQQHQ LQHHQQQQLH GGGDHDKRKH GSTRKDGKSV  240
DAKTERRLAQ NREAARKSRL RKKAYVQNLE TSRVRLQQIE QELQRARSQQ QLQPASLQLA  300
DEGVPRSSHH GAVKSFAGAA MFDMEYARWL DDDSKRLTDL RGGLQAHLLD TNLGLIVEEC  360
MQHYDELFQL KAALARSDVF HLLTGTWATP AERCFLWMGG FRPSDLLKIL IQQLDPLTEQ  420
QMLGIYSLQQ SSEQAEEALA QGLQQLHQSL ADTVAAGTLN DGPGVPNYMS LMAIALDKLA  480
SLESFYQQVT NLANVQADNL RQQTLHQLRR ILTTRQAARC FLSIGEYYRR LRALSNLWSS  540
RPRENFIGTE SVSPTGTELQ PMHNQPQQNQ YSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616930.1	0.0	transcription factor LG2 isoform X1
Refseq	XP_015616936.1	0.0	transcription factor LG2 isoform X1
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0D9YHP5	0.0	A0A0D9YHP5_9ORYZ; Uncharacterized protein
STRING	OGLUM01G42170.3	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-107	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]