PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G42170.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 561aa MW: 61956.5 Da PI: 6.8639 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.3 | 1e-10 | 242 | 272 | 4 | 34 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ OGLUM01G42170.2 242 AKTERRLAQNREAARKSRLRKKAYVQNLETS 272 799*************************974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.3E-7 | 239 | 315 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.278 | 241 | 285 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.4E-8 | 242 | 273 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.74E-7 | 243 | 286 | No hit | No description |
CDD | cd14708 | 9.53E-21 | 243 | 295 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.6E-7 | 243 | 287 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 246 | 261 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.7E-29 | 324 | 398 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MKGGYKEWIE LVVIMVQGEE SSWRMAASTH HERAIPLNQA LAYGVQAHAS PSVAAAPPAS 60 FLDFQPAAAA AAYFGELEEA LIHGANAGGV VDPGMIRADV HSKSAAAAAT AGYLAARPPT 120 LEIFPSWPMR QQQQLHSGNS QSVGSTTDSS SAQNTMPQME LVSPASIRAS SEHQHQQQQP 180 GQEVMMVTTD DYSYKPGLAA ASPSFQQQHQ LQHHQQQQLH GGGDHDKRKH GSTRKDGKSV 240 DAKTERRLAQ NREAARKSRL RKKAYVQNLE TSRVRLQQIE QELQRARSQG LFLGGCSAAG 300 DMSSGAAMFD MEYARWLDDD SKRLTDLRGG LQAHLLDTNL GLIVEECMQH YDELFQLKAA 360 LARSDVFHLL TGTWATPAER CFLWMGGFRP SDLLKILIQQ LDPLTEQQML GIYSLQQSSE 420 QAEEALAQGL QQLHQSLADT VAAGTLNDGP GVPNYMSLMA IALDKLASLE SFYQQVTNLA 480 NVQADNLRQQ TLHQLRRILT TRQAARCFLS IGEYYRRLRA LSNLWSSRPR ENFIGTESVS 540 PTGTELQPMH NQPQQNQYSG F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101338 | 0.0 | AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616943.1 | 0.0 | transcription factor LG2 isoform X2 | ||||
Swissprot | Q5N7C7 | 0.0 | LG2_ORYSJ; Transcription factor LG2 | ||||
TrEMBL | A0A0D9YHP4 | 0.0 | A0A0D9YHP4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G42170.3 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-118 | bZIP family protein |
Publications ? help Back to Top | |||
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