PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G41000.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 270aa    MW: 27889.2 Da    PI: 6.1606
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G41000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.43.8e-29142195155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++WtpeLH+rFveav++L G++ A+Pk+i++lm+v+gLt+e+v+SHLQkYRl
  OGLUM01G41000.1 142 KARMVWTPELHHRFVEAVAHL-GEKGAVPKAIVRLMNVDGLTRENVASHLQKYRL 195
                      68*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-19139199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-29141199IPR009057Homeodomain-like
PROSITE profilePS5129411.768141198IPR017930Myb domain
TIGRFAMsTIGR015571.2E-24142195IPR006447Myb domain, plants
PfamPF002497.9E-10144194IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLSARGGRPH DADAPLPSSS SSSSSSSSSS SSPSRRMVDA AAASGDACGR VTEWETGLPA  60
PGEMTPVSHQ LVPPALAAAF GIDLAAVGVL LPSPSVDSPV SHLFFPVDED DDEDEEGEGE  120
GGNDDAPAAA AAGGGGGRCG KKARMVWTPE LHHRFVEAVA HLGEKGAVPK AIVRLMNVDG  180
LTRENVASHL QKYRLYLKRT RVAATPPPSP PPPPPPPPPL PPAMYVPCFA AKPPLDAANR  240
SDSPPSRTSD ATTKQNQVKP IKERAVSNAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-26142198157Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032510.0AP003251.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0446B05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878116.11e-126transcription factor PCL1-like
TrEMBLA0A0D9YH810.0A0A0D9YH81_9ORYZ; Uncharacterized protein
STRINGOGLUM01G41000.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.19e-29G2-like family protein