PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G40190.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 158aa    MW: 17010.2 Da    PI: 7.5036
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G40190.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.62.4e-5518111194
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrkting+dll+a++tlGfe+yv+plk+yl+kyre +
  OGLUM01G40190.2  18 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREGD 111
                      69*****************************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.3E-5316120IPR009072Histone-fold
SuperFamilySSF471132.64E-3921116IPR009072Histone-fold
PfamPF008082.8E-282488IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.0E-225270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.0E-227189No hitNo description
PRINTSPR006152.0E-2290108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MADAGHDESG SPPRSGGVRE QDRFLPIANI SRIMKKAVPA NGKIAKDAKE TLQECVSEFI  60
SFVTSEASDK CQKEKRKTIN GEDLLFAMGT LGFEEYVDPL KIYLHKYREG DSKLSSKAGD  120
GSVKKDTIGP HSGASSSSAQ GMVGAYTQGM GYMQPQVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4918109192Transcription factor HapC (Eurofung)
4g92_B4e-4918109192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0954380.0AB095438.1 Oryza sativa Japonica Group OsHAP3A mRNA for HAP3, complete cds.
GenBankAY3324660.0AY332466.1 Oryza sativa (japonica cultivar-group) CCAAT-binding protein (CCB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611523.11e-103nuclear transcription factor Y subunit B-2 isoform X2
SwissprotQ5QMG31e-103NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBLA0A0D9YGX61e-113A0A0D9YGX6_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YGX71e-113A0A0D9YGX7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FVE21e-113A0A0E0FVE2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0FVE31e-113A0A0E0FVE3_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N4L41e-113A0A0E0N4L4_ORYRU; Uncharacterized protein
TrEMBLA0A0E0N4L51e-113A0A0E0N4L5_ORYRU; Uncharacterized protein
STRINGOGLUM01G40190.11e-113(Oryza glumipatula)
STRINGORUFI01G39650.21e-113(Oryza rufipogon)
STRINGONIVA01G41260.21e-113(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.17e-66nuclear factor Y, subunit B10