PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G39360.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 610aa    MW: 65717 Da    PI: 6.0956
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G39360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.96.4e-11353959
                     EEEEE--TT-SS-EEEEEE-STT---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY  9 KYGqKevkgsefprsYYrCtsagCpvkkkversa.edpkvveitYegeHnhe 59
                      YGqK++k+s fpr  Yr   ++C + k v++++ +dp +  +tY+ eH+++
  OGLUM01G39360.1  3 DYGQKNIKDSAFPRCSYR-EDRQCLASKLVQQENdDDPPLYRVTYTYEHTCN 53
                     6*************9999.5679*******987516899***********97 PP
2WRKY46.11e-14366419259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEE.E-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkve.rsaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK++++s++         ++C +kk+v+ r+a +p ++ +tY +eH+++
  OGLUM01G39360.1 366 KDGYQWRKYGQKNIQDSNY-----LSRERSCAAKKQVQqRDAGEPPMFLVTYLNEHTCQ 419
                      7***************984.....55678********7356789*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.5E-16154IPR003657WRKY domain
PROSITE profilePS508118.96155IPR003657WRKY domain
SuperFamilySSF1182906.28E-10254IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-10353IPR003657WRKY domain
PfamPF031062.2E-13352IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-16354422IPR003657WRKY domain
SuperFamilySSF1182904.32E-15360421IPR003657WRKY domain
SMARTSM007742.0E-22365420IPR003657WRKY domain
PfamPF031062.1E-15366419IPR003657WRKY domain
PROSITE profilePS5081110.797367421IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MKDYGQKNIK DSAFPRCSYR EDRQCLASKL VQQENDDDPP LYRVTYTYEH TCNTTPVPTP  60
DVVAEQPPPG AAGDAYLLRF GSSAGGGGGG GAHQQQTERE RQQQNTARRR PFMMLSFDSS  120
SSHQLHEQPH AFPPDGQLPA TAAAASPSSF TAAEALAAPP PAPPLTTTMN DGGDLFSTWD  180
ALRYGLDYDH GHLGNHGLLL KLESNNTHLK VLCTLAAQDN VHKTGEHSVQ YTTRVPQVSA  240
QIKMAFGQDT IEQLYRELAG GRRLSAKLQA LLEGPLDSRG QKEAVDVSRE LGRVFMVSLY  300
MLKPCSNSSR RPEGVTRTAP ETRTDDSICL HTPARVKRVR SEEVLVRNGR EEVVTRTEII  360
TPSPYKDGYQ WRKYGQKNIQ DSNYLSRERS CAAKKQVQQR DAGEPPMFLV TYLNEHTCQQ  420
PQAVPGTPNT AGSSPTTTSR QRQSSSSPPA EMLDLTMNGA GLFSRLLLPH AVGGGGSAAE  480
EEAAIVTCLA AVISGGGAAA APPPLIWPTS APEAAFVASA AGHSPSAADE SVADEAAAAQ  540
MADMDYCFGQ YDQSTFGAAA AADHRVLIGD DGDVQRVVAA RIADTVWPRY TRDTSAWETA  600
GTSSMRGSID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033480.0AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9YGM10.0A0A0D9YGM1_9ORYZ; Uncharacterized protein
STRINGOGLUM01G39360.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.16e-12WRKY DNA-binding protein 62