PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G32750.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 243aa    MW: 25538.3 Da    PI: 8.2945
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G32750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.6e-30157215159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh 
  OGLUM01G32750.1 157 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKNDPRYVVTMYEGIHNHV 215
                      59********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-31144215IPR003657WRKY domain
SuperFamilySSF1182901.44E-26150216IPR003657WRKY domain
PROSITE profilePS5081131.158152217IPR003657WRKY domain
SMARTSM007748.2E-33157216IPR003657WRKY domain
PfamPF031061.3E-23158214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAAAAAGAST PFNFCRHGSH AEYDAVFSGS WMARRPSAAP HGGGASGSGS GSGYGAASYV  60
APTFGAAFRQ QHLDLLDYLS DDQGVPAPPP AAVPSASYVT PAPAMAPAEP VVPDAVAAAG  120
GYPRSVAAAA AAVAGEGRDR TTTDKIAFRT RSDDEILDDG YKWRKYGKKS VKNSPNPRNY  180
YRCSTEGCNV KKRVERDKND PRYVVTMYEG IHNHVCPGTV YYAAQDAASG RFFVAGISHP  240
DLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-24148217877Probable WRKY transcription factor 4
2lex_A7e-24148217877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085550.0AK108555.1 Oryza sativa Japonica Group cDNA clone:002-144-E10, full insert sequence.
GenBankAY8706090.0AY870609.1 Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635650.11e-177WRKY transcription factor WRKY24
TrEMBLQ5JLU21e-176Q5JLU2_ORYSJ; Os01g0714800 protein
STRINGOS01T0714800-011e-177(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-35WRKY DNA-binding protein 51