PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G32660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 403aa MW: 43506.1 Da PI: 9.6256 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.3 | 1.8e-15 | 183 | 280 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k+l sdv+++gr+vlpkk ae++ + k ++k l + d+++ + W++k++y ++ks++yvl+ ++ ++v+ ++L+ gD++v++ d+ OGLUM01G32660.1 183 QKELRYSDVSQLGRIVLPKKEAEAYlpiltS--KDGKKSLCMHDLQNaQLWTFKYRYwpNNKSRMYVLE-NTGDYVRTHDLQLGDSIVIYKDD- 272 688899**********************752..446678*****665599*******89999999**99.********************444. PP SEE..EEE CS B3 88 sefelvvk 95 ++ ++v++ OGLUM01G32660.1 273 ENNRFVIG 280 55555665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-23 | 181 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.45E-17 | 181 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.23E-22 | 181 | 279 | No hit | No description |
SMART | SM01019 | 1.1E-13 | 182 | 285 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.234 | 182 | 285 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-12 | 183 | 280 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010116 | Biological Process | positive regulation of abscisic acid biosynthetic process | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010373 | Biological Process | negative regulation of gibberellin biosynthetic process | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MRGEERWQEQ PALASHPSRA TLRPRGWPRL GLAPTGVGSS CPPAPASELA RHLARRAPVS 60 ASPPVLPPIK DQGARPPTLA ASAAAASSPP PPPPPPPIPP LPPSTSTSAA RPTDMAGVTS 120 KRRSSSASTS SSSGDGAAVS DRPRGVTRKR RSGGRCPRPA ASLRPAAPRP SSHHTAGLRV 180 ILQKELRYSD VSQLGRIVLP KKEAEAYLPI LTSKDGKKSL CMHDLQNAQL WTFKYRYWPN 240 NKSRMYVLEN TGDYVRTHDL QLGDSIVIYK DDENNRFVIG AKKAGDQQAA TVPQVDEHIS 300 TLFPIFPIAQ VDDYLSPMAP QVDISAFVPH ADENHEIFDG ILNSLPEIPV ANVRYSDFFD 360 PFDDGMDMAN TLNANANQSA SLHVTDDKSG HSLIPNPKSG PHM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 1e-39 | 178 | 292 | 1 | 114 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 1e-39 | 178 | 292 | 1 | 114 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 151 | TRKRRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00382 | DAP | Transfer from AT3G26790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF521182 | 0.0 | EF521182.1 Orayza sativa japonica LFL1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635173.1 | 0.0 | B3 domain-containing protein LFL1 isoform X4 | ||||
Swissprot | A4LBC0 | 0.0 | LFL1_ORYSJ; B3 domain-containing protein LFL1 | ||||
TrEMBL | A0A0D9YE12 | 0.0 | A0A0D9YE12_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G32660.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8091 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 2e-39 | B3 family protein |
Publications ? help Back to Top | |||
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