PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G24640.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 288aa    MW: 30006.3 Da    PI: 8.1574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G24640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.92.4e-191371841359
                      E--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  13 KevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      K+ kg++ pr+YYrCt a gCpvkk+v+r+++d++v+++ Y g Hnh+
  OGLUM01G24640.1 137 KTAKGNPWPRGYYRCTGApGCPVKKQVQRCNHDTSVLVTAYDGVHNHP 184
                      889*************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031061.0E-15137184IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-18137184IPR003657WRKY domain
SuperFamilySSF1182903.01E-16137185IPR003657WRKY domain
PROSITE profilePS5081120.197137186IPR003657WRKY domain
SMARTSM007746.4E-18137185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNTFTLFRDE VQKASEKVHR HHANDEEAGL FLSLGLSLGS SPDACQCHAS KKDEADAGNG  60
GGDGYLALAL RCAPAAGEPM VHPKRQRATT NSSSSSSICG EYGGGAAAAA VPAGHDDDDR  120
SCMITAASTA NRPGRVKTAK GNPWPRGYYR CTGAPGCPVK KQVQRCNHDT SVLVTAYDGV  180
HNHPITPYAA ALPPSSSSSS SVAAAMLASS SSSSTWSELQ RAMPAAQSSW SQRNYPIQAD  240
VVAKAIWDPK FQATVAAAVA SYVRDREQSA RVAGGKGAGE LFNLAPPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-151371872675WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642021.11e-154probable WRKY transcription factor 72
TrEMBLA0A0D9YB290.0A0A0D9YB29_9ORYZ; Uncharacterized protein
STRINGOGLUM01G24640.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-21WRKY DNA-binding protein 9