PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G23470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 467aa MW: 47205.7 Da PI: 5.1513 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.2 | 1.3e-07 | 361 | 401 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P a K++ a++L +A +Y++ L OGLUM01G23470.1 361 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 401 69******************966......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.869 | 352 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-13 | 358 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 358 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.76E-11 | 358 | 406 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.1E-11 | 360 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-5 | 361 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MDRGFNEMIL SESVWNGGGG GGDGDGGAVV LPPEVGGVNA VDGSGMTVLE RLVLDEALAA 60 AILELQGIQA PGCGGGGGKV AVVPPPTAGD GGVEAAVAFA AMATGTPAYA DVDADVLQRQ 120 RQHHHRHQGA MGMAAEYDVA PATPAVTLSA VPPPPPPPAF ATAAASVDGG GAMDATVFSG 180 IGNDDVVDAV SATVAMTTAT ATTSQCERVR GGGGGGGCGR KQRRPGRKRK AAEPTAAAAA 240 ADMSSQDNPL CSLLASNTAG ADGGIQIAFS TSAPASKRAK PSLSSSSSSI SFDGRGPGGN 300 CGGGGGDDPL YEPDTEALAQ VKEMIYRAAA MRPVTLGAED AGERPRRRNV RISSDPQTVA 360 ARQRRERISE RLRVLQKLVP GGAKMDTASM LDEAANYLRF LKSQIRELQT LDRRNYPNAA 420 MSINTAAATT MATSSSPTYN NSNAAMPAFA FPETLGCGGG GGVEQLI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 361 | 366 | RQRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003141 | 0.0 | AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05. | |||
GenBank | AP003296 | 0.0 | AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629736.1 | 0.0 | transcription factor LATE FLOWERING-like | ||||
Refseq | XP_015629741.1 | 0.0 | transcription factor LATE FLOWERING-like | ||||
TrEMBL | A0A0D9YAM8 | 0.0 | A0A0D9YAM8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G23470.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1546 | 37 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 1e-34 | bHLH family protein |