PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G20420.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 509aa    MW: 55611.4 Da    PI: 8.0087
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G20420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573431.3e-13257347397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      f+r w+ +Dei++L +l+d   + g  p++     f+e v++    ++++s++ eK+r+LK+++++ v         +++k+hd +  els  i
  OGLUM01G20420.1 257 FRRKWNGNDEIMILEALVDQIRSGGNVPQEpGHPLFHELVQRLEGRTFNHSDVREKVRSLKRRYNDVVLS-----GLAITKDHDLQLHELSCEI 345
                      899*****************999999998845556777777777789********************999.....789**************** PP

           DUF573  96 Wg 97 
                      Wg
  OGLUM01G20420.1 346 WG 347
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.6E-13257347IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MRRRSPPPAA AQPPRPPTRA AESGEEDGDP GKDEVAAPPK GDSALPRSGS GFGSGNAAAP  60
DGPAKSPMKP KKRVTAPPSS DHGSRENLAA GSPSNEVPAP QGDDAAQEDD LPESPPKSKK  120
NRKKKKKALR AGDSGKVAAP DDPAEPTRPQ QDVGEVDGRL AESEQEVPPN AGKAKKKASA  180
QARKKPSAKQ HAAAQEEEDG DLMAEAEEEV APRQGDEEDG KGPLPQRKSK RVAALSGSIC  240
PPDPKRAKIV DAQKPGFRRK WNGNDEIMIL EALVDQIRSG GNVPQEPGHP LFHELVQRLE  300
GRTFNHSDVR EKVRSLKRRY NDVVLSGLAI TKDHDLQLHE LSCEIWGRSV AHAGDDKQRC  360
LARDEQSSLA RDEQKSFAGD EEKSLARDEQ SSLARDEQKS FARDEKSLAR DEEKSLASDE  420
QRSFDDMCKQ FPLLAKEIKV LMEGQPAIME LFPRLDGDQV VAIEKKLENL RWIDMKRKKK  480
MAVKMAKIRK GLIYKLEGAA ILADGNMIH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126KKNRKKKKK
2172184KAKKKASAQARKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029700.0AP002970.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504D03.
GenBankAP0032130.0AP003213.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0054L14.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644071.10.0basic salivary proline-rich protein 2
TrEMBLA0A0D9Y9H00.0A0A0D9Y9H0_9ORYZ; Uncharacterized protein
STRINGOGLUM01G20420.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17455910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-07DNA-binding storekeeper protein-related transcriptional regulator