PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G13550.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 355aa    MW: 37771.4 Da    PI: 7.7035
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G13550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.82.5e-19318354237
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+
  OGLUM01G13550.1 318 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQ 354
                      7***********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-20302354IPR003657WRKY domain
SuperFamilySSF1182903.66E-17310354IPR003657WRKY domain
PROSITE profilePS5081120.22312355IPR003657WRKY domain
SMARTSM007741.2E-9317355IPR003657WRKY domain
PfamPF031067.3E-16319354IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MELRPPPPKH HHHRRRRGGG GEDGGEEEEE EAGRLSLRGG GFWRRHDGEE EEEKGGGRRG  60
EIKEVDFFLG ASGRDVVVAS RRHDDGFRGT THGGGGGGDV NIGLDLLTTT TAGAAAGGAA  120
AGAGEEDTGK NHRKEATTAA VDVELRRVVE ENRRLRGMLD ELTRSYSALY HQYLQVTQQQ  180
NHRHPDHHLI MNNNNNRPSL AQTHRTAATT TATTQQFLEP RASSTAQAAA DADMAASDDE  240
AGRGGGDGDA SSPSLSNAAA GGGGGGGNKM RRVGGQDETA AAAPARENGE QQAAAAAELP  300
CRKPRVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMAIGCP VRKQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024801e-171AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0149571e-171AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880603.11e-150probable WRKY transcription factor 47 isoform X1
RefseqXP_025880608.11e-152WRKY transcription factor 6 isoform X4
TrEMBLA0A0D9Y7200.0A0A0D9Y720_9ORYZ; Uncharacterized protein
STRINGOGLUM01G13550.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.16e-31WRKY family protein