PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM01G11830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 164aa MW: 18828.5 Da PI: 4.5714 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 32.9 | 2.1e-10 | 42 | 106 | 1 | 68 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 +fY++YA++ GF ++k++s++ ++++ + t+ Cs++gk++ ++k+ + +++++ r++ + ++ OGLUM01G11830.1 42 DFYKKYARKKGFAITKRSSRTGQDENIVQYFTLACSRQGKAQYSSKN---TLKPNPSIRMDSSSEAVI 106 6*********************9999999***************999...444555555444444444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-7 | 42 | 104 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence Send to blast |
MEDDFHIEEM EEESEDQATE GDVELAEPKK GMVFDSLDDA FDFYKKYARK KGFAITKRSS 60 RTGQDENIVQ YFTLACSRQG KAQYSSKNTL KPNPSIRMDS SSEAVIKPKQ TCTQPYTGSK 120 NRASPFEEER SKGRPSRTEN ESNEENRIDE QNWSKEESGI DEKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC226788 | 1e-107 | AC226788.1 Oryza minuta clone OM__Ba0203J01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171727.1 | 2e-29 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171728.1 | 2e-29 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171729.1 | 2e-29 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171730.1 | 2e-29 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171731.1 | 2e-29 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
TrEMBL | A0A0D9Y6F5 | 1e-117 | A0A0D9Y6F5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G11830.1 | 1e-118 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16056 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80010.1 | 2e-08 | FAR1-related sequence 8 |