PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G11690.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 549aa    MW: 59782.4 Da    PI: 4.6177
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G11690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.39.7e-40162221261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s
  OGLUM01G11690.1 162 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSS 221
                      7899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31148219IPR003851Zinc finger, Dof-type
PfamPF027013.2E-32164220IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.863166220IPR003851Zinc finger, Dof-type
PROSITE patternPS013610168204IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MCDKDPGIKL FGRVIPLAPE AEAAAAADGS DQPEAAAAAE VEPAAQDEDH HKETEESKDD  60
EMKVDVPQEE EDNEMKVDAP QEKKDNEVTA DVPEEKGNDE MRVDASESIE SIEPVSRSTL  120
DNKKEDQGQM NNVEEKAASD SKDENEKTAN DESGQDKVLK KPDKILPCPR CNSMDTKFCY  180
YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP VGAGRRKSKS SSLHYRHLLM APDCMMGSRV  240
EISKSMNPEA FASAHSTPIQ PIGRNETVLK FGPEVPLCES MASVLNIQEQ NGTNAAAVPT  300
GENQEDNSCI SSITSHNVLP ENAAQVDKNS TPVYCNGVGP VLQYYLGAPY MYPWNIGWNN  360
VPMMVPGTSM PESASQSESC STSSAPWMNM NSPMMPVASR LSTPPFPYPL VPPALWGCLS  420
SWPATAWNIP WIRTNGGCMS PSSSSNSSCS GNGSPLGKHS RDDSLPLKED KEEKSLWVPK  480
TLRIDDPDEA AKSSIWATLG IKPGDPGIFK PFQSKGESKG QAASETRPAR ALKANPAALS  540
RSQSFQETS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0013830.0AP001383.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0453A06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618265.10.0cyclic dof factor 2
TrEMBLA0A0D9Y6D90.0A0A0D9Y6D9_9ORYZ; Uncharacterized protein
STRINGOGLUM01G11690.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-70cycling DOF factor 2