PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G10890.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 615aa MW: 68155 Da PI: 8.6323 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.6 | 2.1e-08 | 517 | 538 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f rtGtCk+Gd+C++ H++ OGLUM01G10890.3 517 CQHFVRTGTCKFGDSCRYFHPK 538 ********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.200.20 | 6.8E-26 | 65 | 172 | No hit | No description |
CDD | cd14137 | 0 | 67 | 359 | No hit | No description |
SuperFamily | SSF56112 | 2.97E-89 | 71 | 382 | IPR011009 | Protein kinase-like domain |
PROSITE profile | PS50011 | 44.4 | 72 | 356 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 1.9E-65 | 72 | 356 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 1.1E-90 | 72 | 356 | IPR000719 | Protein kinase domain |
PROSITE pattern | PS00107 | 0 | 78 | 102 | IPR017441 | Protein kinase, ATP binding site |
Gene3D | G3DSA:1.10.510.10 | 3.7E-59 | 173 | 368 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 193 | 205 | IPR008271 | Serine/threonine-protein kinase, active site |
SMART | SM00451 | 9.2E-4 | 451 | 486 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 4.37E-13 | 452 | 494 | No hit | No description |
Pfam | PF06220 | 6.9E-9 | 453 | 485 | IPR013085 | Zinc finger, U1-C type |
SMART | SM00356 | 1.1E-4 | 513 | 538 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 515 | 538 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.831 | 516 | 539 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 516 | 536 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-6 | 516 | 538 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0046777 | Biological Process | protein autophosphorylation | ||||
GO:1901002 | Biological Process | positive regulation of response to salt stress | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0004674 | Molecular Function | protein serine/threonine kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MGSVGVAPSG LKNSSSTSMG AEKLPDQMHD LKIRDDKEVE ATIINGKGTE TGHIIVTTTG 60 GRNGQPKQTV SYMAERIVGQ GSFGIVFQAK CLETGETVAI KKVLQDKRYK NRELQTMRLL 120 DHPNVVALKH CFFSTTEKDE LYLNLVLEYV PETVHRVVKH YNKMNQRMPL IYVKLYMYQI 180 CRALAYIHNS IGVCHRDIKP QNLLVNPHTH QLKLCDFGSA KVLVKGEPNI SYICSRYYRA 240 PELIFGATEY TTAIDIWSAG CVLAELMLGQ PLFPGESGVD QLVEIIKVLG TPTREEIKCM 300 NPNYTEFKFP QIKAHPWHKV FHKRLPPEAV DLVSRLLQYS PNLRCTAVEA LVHPFFDELR 360 DPNARLPNGR FLPPLFNFKP HELKGIPSDI MAKLIPEHVK KQCSYAGSLF AQQQKLLEGE 420 DQNSEELSRE RGEAAEGGKK GGGGRGSEMP LGKYYCDYCE KQFQDTPAAR KRHLDGAQHH 480 RARALWYDAV RRQELHGGGG GAPPLLHQPG AAAIGVCQHF VRTGTCKFGD SCRYFHPKPP 540 PANPGPAPSG PVSGPMAQQS NIQGSQPNFV GYQAADGSSF SGNILGGHTS WGNLPPSLRP 600 PPEGGYPPFP FVDWG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5t31_A | 1e-172 | 56 | 404 | 40 | 387 | Glycogen synthase kinase-3 beta |
5t31_B | 1e-172 | 56 | 404 | 40 | 387 | Glycogen synthase kinase-3 beta |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 436 | 443 | GGKKGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB059621 | 0.0 | AB059621.1 Oryza sativa OSKgamma mRNA for shaggy-related protein kinase gamma, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610903.1 | 0.0 | shaggy-related protein kinase alpha | ||||
Swissprot | P51139 | 0.0 | MSK3_MEDSA; Glycogen synthase kinase-3 homolog MsK-3 | ||||
TrEMBL | A0A0D9Y649 | 0.0 | A0A0D9Y649_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G10890.2 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 1e-23 | C3H family protein |
Publications ? help Back to Top | |||
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