PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G09110.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 340aa    MW: 38882.5 Da    PI: 5.8919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G09110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-1458109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 
                      +g+WT +E  +l +++k++G ++Wk++ +  g      ++Rt++++k++w++
  OGLUM01G09110.1  58 KGPWTSWENSILEKYIKKHGERNWKLVQKNTGllsfciTRRTDNEIKNYWNT 109
                      79************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.27353115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-1454113IPR009057Homeodomain-like
SuperFamilySSF466891.27E-1055113IPR009057Homeodomain-like
SMARTSM007171.5E-1057113IPR001005SANT/Myb domain
PfamPF002498.7E-1258109IPR001005SANT/Myb domain
CDDcd001672.25E-960109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MRGHRSRVRG DGGLRMHRSG SDPDSDKAHW YMSNSDDESF VDKDKDCRRG TVAPLLKKGP  60
WTSWENSILE KYIKKHGERN WKLVQKNTGL LSFCITRRTD NEIKNYWNTR IKKCKNNRWL  120
LYPANVCNDA LNEDQYGSVD PSVREKLTNN QLEDTTSMYS APQFSYASIS NILDRRLASK  180
DYDSIEDQRN RIEVAAEYEI PLPVLKTTNN DIFPSASIFA NHGISNGNLS ALSTTDALQM  240
ELPLIQFDPN NQFIYSRAYA THLTNLALLN DQSEELLNHI DVLKYVVMKE ELSGGTHTSM  300
TPSNELVVPR YEGDVPPLQD DFTPYLYLNG ANLSIFEDIK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankD886210.0D88621.1 Oryza sativa mRNA for OSMYB5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881555.11e-160transcription factor GAMYB
TrEMBLA0A0D9Y5H80.0A0A0D9Y5H8_9ORYZ; Uncharacterized protein
STRINGOGLUM01G09110.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154081018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-15myb domain protein 101