PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM01G07380.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 843aa MW: 90989.3 Da PI: 6.8924 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9e-19 | 12 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ OGLUM01G07380.2 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70 6789*****************************************************97 PP | |||||||
2 | START | 99.1 | 8.2e-32 | 179 | 350 | 2 | 202 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 +aee+++e+++ka+ ++ W +++ +++g++++ +++ s+++ g a+ra+g+v m++a v+e+l+d++ W +++++++++ OGLUM01G07380.2 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 258 789*******************************************************.8888888888*******88776............. PP EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHH CS START 96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksg 188 +l+a+++l+p Rdf+ +R+ + + +++p ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l++s+ OGLUM01G07380.2 259 -NLYAPTTLAPaRDFWLLRSKQG--G------------PSMPL-VQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESS 336 .799***************9666..3............44444.4569********************************************** PP HHHHHHHHHHHTXX CS START 189 laegaktwvatlqr 202 ++ ++k+ +a ++ OGLUM01G07380.2 337 AMVAQKISMALCKI 350 *********99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.532 | 7 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-15 | 9 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.77E-16 | 12 | 72 | No hit | No description |
Pfam | PF00046 | 2.2E-16 | 12 | 70 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 13 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-18 | 14 | 70 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 4.12E-6 | 64 | 103 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.3E-6 | 177 | 329 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.65E-24 | 178 | 338 | No hit | No description |
SMART | SM00234 | 1.5E-19 | 178 | 354 | IPR002913 | START domain |
Pfam | PF01852 | 2.8E-29 | 179 | 349 | IPR002913 | START domain |
PROSITE profile | PS50848 | 10.318 | 249 | 336 | IPR002913 | START domain |
Pfam | PF08670 | 3.5E-48 | 694 | 842 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 843 aa Download sequence Send to blast |
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW 60 FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGRM 120 RRVPAFPPQA AAPAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA 180 EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE 240 ILKDRPLWLR DCRSMDVVNL YAPTTLAPAR DFWLLRSKQG GPSMPLVQPF IRGEMLPSGF 300 LIRPSDGGGS VIHIVDHMDL EPWSVPEVVR PLYESSAMVA QKISMALCKI QALRYLRQVA 360 HEDTRSVITG WGRQPAALRA LSQKLTRGFN ETLNGLADDG WSVIESDGVD DVCISVNSSK 420 VIGCNATFSS GLPIVSTGVL CAKASMLLQD VSPPSLLQFL REHRSQWADS NLDAFFASAM 480 KPNFCNLPMS RLGGFSGQVI LPLAHTFEPE EFLEVIKLGN ASNYQDTLVH RDLFLLQMYN 540 GVEESSAGTC SELIFAPIDA SFSDDSPLLP SGFRIIPIDS PLDTSSPNCT LDLASTLEAA 600 TPRSRISGVN GGGGGGCAAA AASSKAVMTI AFQFAFDGHL QDSVAAMARQ YMRSIISSVQ 660 RIAVALSSSR LVPPAGAGGG AAPQLAPANP EAATLPRWIC QSFRFHFGAE LIKSVDANSS 720 SESILKAVWH HPSAILCCSL KAMPVFTFAN QSGLDMLETT LVALQDMTLE KVFDDQGRKN 780 LCTELPNIME QGMACMEGGV CVSSVGRAAS YEKAVAWKVV DGDGGGGGGA HCICFMFINW 840 TFL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB374207 | 0.0 | AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624690.1 | 0.0 | homeobox-leucine zipper protein HOX29 | ||||
Swissprot | A2WLR5 | 0.0 | HOX29_ORYSI; Homeobox-leucine zipper protein HOX29 | ||||
TrEMBL | A0A0D9Y4V3 | 0.0 | A0A0D9Y4V3_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G06400.3 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |