PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G07380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 856aa MW: 92342.7 Da PI: 6.6273 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9.2e-19 | 12 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ OGLUM01G07380.1 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70 6789*****************************************************97 PP | |||||||
2 | START | 138.9 | 5.1e-44 | 179 | 370 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 +aee+++e+++ka+ ++ W +++ +++g++++ +++ s+++ g a+ra+g+v m++a v+e+l+d++ W +++++++++ OGLUM01G07380.1 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 258 789*******************************************************.8888888888*******88776............. PP EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +l+a+++l+p Rdf+ +Ry+ l +g++v++++S++s+q p+ ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l+ OGLUM01G07380.1 259 -NLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLY 351 .799***************************************999999********************************************* PP HHHHHHHHHHHHHHTXXXX CS START 186 ksglaegaktwvatlqrqc 204 +s+++ ++k+ +a+l++++ OGLUM01G07380.1 352 ESSAMVAQKISMAALRYLR 370 ***************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.532 | 7 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-15 | 9 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.86E-16 | 12 | 72 | No hit | No description |
Pfam | PF00046 | 2.3E-16 | 12 | 70 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 13 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-18 | 14 | 70 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 4.20E-6 | 64 | 103 | No hit | No description |
PROSITE profile | PS50848 | 19.188 | 169 | 372 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 6.4E-16 | 176 | 347 | IPR023393 | START-like domain |
SMART | SM00234 | 2.0E-34 | 178 | 372 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.02E-31 | 178 | 372 | No hit | No description |
Pfam | PF01852 | 9.8E-42 | 179 | 370 | IPR002913 | START domain |
Pfam | PF08670 | 3.6E-48 | 707 | 855 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence Send to blast |
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW 60 FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGRM 120 RRVPAFPPQA AAPAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA 180 EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE 240 ILKDRPLWLR DCRSMDVVNL YAPTTLAPAR DFWLLRYTSI LDDGSLVVCE RSLSSKQGGP 300 SMPLVQPFIR GEMLPSGFLI RPSDGGGSVI HIVDHMDLEP WSVPEVVRPL YESSAMVAQK 360 ISMAALRYLR QVAHEDTRSV ITGWGRQPAA LRALSQKLTR GFNETLNGLA DDGWSVIESD 420 GVDDVCISVN SSKVIGCNAT FSSGLPIVST GVLCAKASML LQDVSPPSLL QFLREHRSQW 480 ADSNLDAFFA SAMKPNFCNL PMSRLGGFSG QVILPLAHTF EPEEFLEVIK LGNASNYQDT 540 LVHRDLFLLQ MYNGVEESSA GTCSELIFAP IDASFSDDSP LLPSGFRIIP IDSPLDTSSP 600 NCTLDLASTL EAATPRSRIS GVNGGGGGGC AAAAASSKAV MTIAFQFAFD GHLQDSVAAM 660 ARQYMRSIIS SVQRIAVALS SSRLVPPAGA GGGAAPQLAP ANPEAATLPR WICQSFRFHF 720 GAELIKSVDA NSSSESILKA VWHHPSAILC CSLKAMPVFT FANQSGLDML ETTLVALQDM 780 TLEKVFDDQG RKNLCTELPN IMEQGMACME GGVCVSSVGR AASYEKAVAW KVVDGDGGGG 840 GGAHCICFMF INWTFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB374207 | 0.0 | AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624690.1 | 0.0 | homeobox-leucine zipper protein HOX29 | ||||
Swissprot | A2WLR5 | 0.0 | HOX29_ORYSI; Homeobox-leucine zipper protein HOX29 | ||||
TrEMBL | A0A0D9Y4V2 | 0.0 | A0A0D9Y4V2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G07380.3 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |