PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G06940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 97aa MW: 10787.5 Da PI: 10.6606 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 25 | 5.3e-08 | 8 | 34 | 1 | 27 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk 27 lppG+rF+P d+elv++yL ++ ++++ OGLUM01G06940.1 8 LPPGVRFDPADDELVSRYLLRRRRSRR 34 79*****************99988777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-8 | 4 | 38 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-5 | 9 | 33 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MAAAADGLPP GVRFDPADDE LVSRYLLRRR RSRRRIGDRV AQVVLQFAKD DDIGFGGSHS 60 AQVLLSRDRK LTPITALLRK TMSMPVFLVA CYLQDAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106645 | 2e-41 | AK106645.1 Oryza sativa Japonica Group cDNA clone:002-113-E10, full insert sequence. | |||
GenBank | AP005641 | 2e-41 | AP005641.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13. | |||
GenBank | AP014963 | 2e-41 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 2e-41 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9Y4M0 | 6e-62 | A0A0D9Y4M0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G06940.1 | 1e-62 | (Oryza glumipatula) |