PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G05840.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 224aa MW: 23200.9 Da PI: 10.8387 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.8 | 1.4e-10 | 203 | 224 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk++++pr OGLUM01G05840.4 203 LDDGYKWRKYGQKVVKNTQHPR 224 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-12 | 188 | 224 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-9 | 195 | 224 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.528 | 198 | 224 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-6 | 204 | 224 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MFPSPGRAVM ALGHHGAARQ PPTTMAAAAS SSTTSAAAAP ATATTTVAFS FQHPTPTPSH 60 HHHHHGVLGY SSLVLDHHHP TTAAASSHAP SPPTLHHHHG GGLHAAAPPP RSSPPHPWSC 120 EEGDHRGRPQ MGNKGEAAAA MGAMGINDAG NNTAAAAAAQ HHLGVGAVRM KKVGGGGGGG 180 GKARRKVREP RFCFKTMSDV DVLDDGYKWR KYGQKVVKNT QHPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108755 | 0.0 | AK108755.1 Oryza sativa Japonica Group cDNA clone:002-150-F11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632233.1 | 1e-159 | probable WRKY transcription factor 13 isoform X2 | ||||
Refseq | XP_025879175.1 | 1e-159 | probable WRKY transcription factor 13 isoform X3 | ||||
Swissprot | Q9SVB7 | 7e-25 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A0D9Y476 | 1e-159 | A0A0D9Y476_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G05840.2 | 1e-159 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 1e-18 | WRKY DNA-binding protein 13 |