PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G04860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 206aa MW: 21650 Da PI: 4.2623 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.4e-13 | 13 | 53 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + E e ++ + k+lG++ W+ Ia++m+ gRt++++k++w++ OGLUM01G04860.1 13 ISDREAETIISLQKLLGNR-WSVIAAKMP-GRTDNEIKNYWNS 53 577899*************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-21 | 1 | 58 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.4E-13 | 1 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.552 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-12 | 9 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.80E-10 | 12 | 52 | No hit | No description |
Pfam | PF00249 | 6.3E-11 | 14 | 53 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MNYLRPDLKK EPISDREAET IISLQKLLGN RWSVIAAKMP GRTDNEIKNY WNSRIRKRQS 60 AAAGSGGCPT TGTVMEKEPT ANAATVAAAP EAASPPPPPI PARLPMFSCQ LLDGGGGAAA 120 TTQSPPNAGS SDISEVSACG GNGRGEDSSR DYCFSGGDVD GDGDMVHLLA LDDLDLLVDV 180 PGLLDVDAWD CELYRADYST SSSMSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-12 | 2 | 58 | 51 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002912 | 0.0 | AP002912.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028E10. | |||
GenBank | AP003339 | 0.0 | AP003339.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1276_B06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY459343 | 0.0 | AY459343.1 Oryza sativa (japonica cultivar-group) clone CL018501.1 R2R3-MYB gene region. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694952.1 | 5e-90 | PREDICTED: myb-related protein Hv33-like | ||||
TrEMBL | A0A0D9Y3T8 | 1e-148 | A0A0D9Y3T8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G04860.1 | 1e-149 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.2 | 2e-22 | myb domain protein 15 |