PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G02990.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 384aa    MW: 42622.4 Da    PI: 6.0815
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G02990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-09118163347
                      SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE +++ +a + l  +  +W+++ar ++ gR++ ++ ++++++
  OGLUM01G02990.1 118 KWSPEENKQFERALAGLDLRcpDWDRVARAIP-GRSALEVMNHFRDL 163
                      8*****************99************.***********976 PP
2Myb_DNA-binding47.63.9e-15231275347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  OGLUM01G02990.1 231 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 275
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.5E-5115166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-4117162IPR009057Homeodomain-like
SuperFamilySSF466894.56E-8118171IPR009057Homeodomain-like
PfamPF002495.6E-8118163IPR001005SANT/Myb domain
PROSITE profilePS500906.284118164IPR017877Myb-like domain
CDDcd001672.32E-7118163No hitNo description
PROSITE profilePS5129418.359224280IPR017930Myb domain
SuperFamilySSF466891.05E-17225280IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-17227278IPR006447Myb domain, plants
SMARTSM007173.4E-13228278IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-12228274IPR009057Homeodomain-like
PfamPF002491.5E-12231275IPR001005SANT/Myb domain
CDDcd001672.10E-11231276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MQGPITSCHS QEPDFGSLSL LLLISAQGKK AIREAKRERG EGREEILAEF EQEPREIDRL  60
LSSFRGRDRP EAELSCGKKE EEEEEEEEEK EIGDDDEGCV LPPMDHYASR GNWFMARKWS  120
PEENKQFERA LAGLDLRCPD WDRVARAIPG RSALEVMNHF RDLELDVQQI ENGMVPFPVY  180
GAAAAGGAFT LQWDGAHGVG DFRNAYRFGG GGGGKRHFGR TPEQERKKGV PWTEEEHKLF  240
LLGLKKYGKG DWRNISRNFV QTRTPTQVAS HAQKYFIRLN SGGKDKRRSS IHDITTVNLT  300
DDRPPSPSQS SLISNQSNTS TLTAAVAPFS STADVKPQNA ANASFNSPSR TLGMAGYGMG  360
LQDQGLQCGG PLHDQLAASR SILF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-12108180373RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679640.0AK067964.1 Oryza sativa Japonica Group cDNA clone:J013124L02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621817.10.0transcription factor DIVARICATA
SwissprotQ8S9H72e-80DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D9Y3370.0A0A0D9Y337_9ORYZ; Uncharacterized protein
STRINGOGLUM01G02990.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-62MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]