PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G02860.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 323aa    MW: 34658.4 Da    PI: 10.5837
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G02860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.31.7e-29134235186
                      EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                      f+k+ tpsdv+k++rlv+pk++ae+h                   + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD
  OGLUM01G02860.1 134 FEKAVTPSDVGKLNRLVVPKQHAEKHfplrraassdsasaaaAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGD 227
                      89****************************9999888887775555699********************************************* PP

                      EEEEEE-S CS
               B3  79 fvvFkldg 86 
                       +vF+++ 
  OGLUM01G02860.1 228 AIVFSRSA 235
                      ****9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-39129251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-29131246IPR015300DNA-binding pseudobarrel domain
CDDcd100179.92E-28132234No hitNo description
SMARTSM010191.2E-22134249IPR003340B3 DNA binding domain
PfamPF023624.7E-27134235IPR003340B3 DNA binding domain
PROSITE profilePS5086313.549134249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSKPAA  60
AAAAAVAQQS SRYKGVVPQP NGRWGAQIYE RHARIVDMLR KHTYADELRQ GLRRGRGMGA  120
RAQPTPSWAR EPLFEKAVTP SDVGKLNRLV VPKQHAEKHF PLRRAASSDS ASAAAAAATG  180
KGVLLNFEDG EGKVWRFRYS YWNSSQSYVL TKGWSRFVRE KGLRAGDAIV FSRSAYGPDK  240
LLFIDCKKNN AAVATTTTCA GDERPTTTTS GAEPRVVRLF GVDIAGGDCR KRERAVEMGQ  300
EAFLLKRQCV VHQRTPVLGA LLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-4913124711115DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622259.11e-173AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS01e-174Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A0D9Y3180.0A0A0D9Y318_9ORYZ; Uncharacterized protein
STRINGOGLUM01G02860.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.29e-63related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]