PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G02200.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 338aa    MW: 36542.7 Da    PI: 4.5579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G02200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.7e-12114157149
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaa 49 
                      ++y+GVr +k +g+W+AeIr  +     +  r +lg+f ta+ A +a+ + 
  OGLUM01G02200.1 114 TCYRGVRLRK-WGKWAAEIRNpF-----TgHREWLGTFVTADAASAAY-QS 157
                      68******99.**********55.....45999*******55555555.43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-7114156IPR001471AP2/ERF domain
SMARTSM003801.9E-12115169IPR001471AP2/ERF domain
PROSITE profilePS5103216.595115174IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-13115164IPR016177DNA-binding domain
PRINTSPR003672.7E-7116127IPR001471AP2/ERF domain
CDDcd000185.07E-13116147No hitNo description
Gene3DG3DSA:3.30.730.108.6E-18116166IPR001471AP2/ERF domain
PRINTSPR003672.7E-7138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAPSKQQQML LKKVMAKKPK TKRLSGFGLK PSAAFSRPHV PSAAASLQPS RRVRVVFEDP  60
DATDSDSDDD EDAGAASKKR YFELFIGKPA SSMKQASPAS TVAAYANIGK VGSTCYRGVR  120
LRKWGKWAAE IRNPFTGHRE WLGTFVTADA ASAAYQSASR NFAEEKRRRG VASSASPASS  180
ATPTPTASSS SSTSAAPFAH PSPSSVLEAT KPAPKPESPP LPEQAATPLL VEATNETAEL  240
PDDPEFYKDI LRGLQLPDID PMDFRAGLDA LDISDVPAYM NGEQDVLFTE DMLLGDFAEE  300
DDLDLDDIGD DFCEDFPEIP SGYDFGRGDM FRQVDFCV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1196450.0AK119645.1 Oryza sativa Japonica Group cDNA clone:002-130-G05, full insert sequence.
GenBankAP0025260.0AP002526.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504H10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3418280.0AY341828.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP210 mRNA, complete cds.
GenBankEU8372590.0EU837259.1 Oryza sativa Japonica Group clone KCS234C10 AP2 domain containing protein mRNA, complete cds.
GenBankKC9883300.0KC988330.1 Oryza sativa AP2 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616539.10.0ethylene-responsive transcription factor ERF118
TrEMBLA0A0D9Y2T20.0A0A0D9Y2T2_9ORYZ; Uncharacterized protein
STRINGOGLUM01G02200.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.39e-11related to AP2 2