PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G00350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 321aa    MW: 35768.8 Da    PI: 7.1622
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G00350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.71.5e-55141421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrFhPtdee++++yL++kv +++  +  +i evd++k+ePwdLp k+  ++ekewyf++++d+ky+tg r+nrat++gyWkatgkdke++
  OGLUM01G00350.1  14 LPPGFRFHPTDEEIITFYLAPKVVDSRGFCVAAIGEVDLNKCEPWDLPgKAKMSGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDKEIF 107
                      79********************99999556588***************544445789************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++ l+g+kktLvfykgrapkg kt+Wvmheyrl
  OGLUM01G00350.1 108 RNHHMLIGMKKTLVFYKGRAPKGDKTNWVMHEYRL 142
                      *********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6210170IPR003441NAC domain
PROSITE profilePS5100559.58514170IPR003441NAC domain
PfamPF023652.9E-2815142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGEQQQQVER QPDLPPGFRF HPTDEEIITF YLAPKVVDSR GFCVAAIGEV DLNKCEPWDL  60
PGKAKMSGEK EWYFYCQKDR KYPTGMRTNR ATEAGYWKAT GKDKEIFRNH HMLIGMKKTL  120
VFYKGRAPKG DKTNWVMHEY RLADASPPPP PSSAEPPRQD DWAVCRIFHK SSGIKKPVPV  180
APHQVPAAAN YQQQQQMAMA SAGIIQVPMQ MQMPSMSDQL RMLDDFSTTA SLSLMAPPPP  240
SYSTLPAGFP LQINSGAHPQ QFVGNPSMYY QQQQMDMAGG GFVVSEPSSL VVSPQDAADL  300
NNNAADISSM ACNMDAAIWK Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5211764171NO APICAL MERISTEM PROTEIN
1ut4_B2e-5211764171NO APICAL MERISTEM PROTEIN
1ut7_A2e-5211764171NO APICAL MERISTEM PROTEIN
1ut7_B2e-5211764171NO APICAL MERISTEM PROTEIN
3swm_A2e-5211767174NAC domain-containing protein 19
3swm_B2e-5211767174NAC domain-containing protein 19
3swm_C2e-5211767174NAC domain-containing protein 19
3swm_D2e-5211767174NAC domain-containing protein 19
3swp_A2e-5211767174NAC domain-containing protein 19
3swp_B2e-5211767174NAC domain-containing protein 19
3swp_C2e-5211767174NAC domain-containing protein 19
3swp_D2e-5211767174NAC domain-containing protein 19
4dul_A2e-5211764171NAC domain-containing protein 19
4dul_B2e-5211764171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422680.0AK242268.1 Oryza sativa Japonica Group cDNA, clone: J075186C19, full insert sequence.
GenBankGU1203530.0GU120353.1 Oryza sativa Japonica Group clone KCS385F08 NAM protein mRNA, complete cds.
GenBankJN9443650.0JN944365.1 Oryza sativa Japonica Group clone KCS263E06 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621005.10.0NAC domain-containing protein 79
SwissprotQ9FK449e-79NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A0D9Y2430.0A0A0D9Y243_9ORYZ; Uncharacterized protein
STRINGOGLUM01G00350.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-78Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]