PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA12G0202900.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 361aa MW: 39275 Da PI: 4.2722

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA12G0202900.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.2e-06	8	29	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F+r+ nL +H t+ ORGLA12G0202900.1 8 PCQFCGKNFKRRGNLLNHELTC 29 6*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.037	7	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MASEWDSPCQ FCGKNFKRRG NLLNHELTCK YISDVHRQTE SSGDAQARKD ILGFHIPRQK 60 RTVPTFPASD YAQGGINGAT TSEAKVDRDP EEETDVLEAL LLLREQPAYP GEETFSDGEP 120 GAGNVDDEPA ASNPDKVLTM CSDKGSSSPV ECYGGDERRV GARAIAGVEE DDLNPNVGCR 180 GVTDCVDESD VIQKQKKKPD LSVADLRDLV EMKQQNMKAD TNIHDQGHPS VMQMQKNELG 240 LDLLPHKNSS DHEVPTLSVS SMDDPDGLVS TDTNSDKETE TVNVGIDINI PEQRESSVTR 300 MQNEKLGLNL LPRNDSSGHE VPILSVSSTD DLNSLIPTDT SSDKDTNSNV ADSLGHCPAQ 360 E

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MASEWDSPCQ FCGKNFKRRG NLLNHELTCK YISDVHRQTE SSGDAQARKD ILGFHIPRQK  60
RTVPTFPASD YAQGGINGAT TSEAKVDRDP EEETDVLEAL LLLREQPAYP GEETFSDGEP  120
GAGNVDDEPA ASNPDKVLTM CSDKGSSSPV ECYGGDERRV GARAIAGVEE DDLNPNVGCR  180
GVTDCVDESD VIQKQKKKPD LSVADLRDLV EMKQQNMKAD TNIHDQGHPS VMQMQKNELG  240
LDLLPHKNSS DHEVPTLSVS SMDDPDGLVS TDTNSDKETE TVNVGIDINI PEQRESSVTR  300
MQNEKLGLNL LPRNDSSGHE VPILSVSSTD DLNSLIPTDT SSDKDTNSNV ADSLGHCPAQ  360
E

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA12G0202900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619004.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619005.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619006.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619007.1	0.0	uncharacterized protein LOC4352628
TrEMBL	A0A0D3HW25	0.0	A0A0D3HW25_9ORYZ; Uncharacterized protein
TrEMBL	I1R923	0.0	I1R923_ORYGL; Uncharacterized protein
STRING	ORGLA12G0202900.1	0.0	(Oryza glaberrima)
STRING	OBART12G16800.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15758	11	11