PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0202700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 363aa    MW: 39964.5 Da    PI: 6.9764
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0202700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.56.1e-077192223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       +C+ C+k+Fs++ +L+ H+++H
  ORGLA12G0202700.1 71 QCQMCSKVFSTSGSLREHMMMH 92
                       7*******************99 PP
2zf-C2H216.42.5e-05275297123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ CgksF +   L  H+r+H
  ORGLA12G0202700.1 275 HRCNTCGKSFGSGQALGGHMRRH 297
                        79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.9E-101034IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0581039IPR007087Zinc finger, C2H2
SMARTSM003550.571032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801132IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.577097IPR007087Zinc finger, C2H2
SMARTSM003553.3E-47092IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-77196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138944.4E-47192No hitNo description
SuperFamilySSF576671.76E-107192No hitNo description
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576671.76E-10270297No hitNo description
Gene3DG3DSA:3.30.160.603.6E-4275297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.907275302IPR007087Zinc finger, C2H2
PfamPF139123.3E-11275298IPR007087Zinc finger, C2H2
SMARTSM003550.0079275297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAPRGKPWKH CCNKCDKSFR SGNALGGHMS CHRSVGNQPK STSSPPTVVD LHMPLLSSCD  60
DNLLLLPPET QCQMCSKVFS TSGSLREHMM MHGGEKVVVK AEEEAAGLIE ALGIADSVQD  120
VMVFSSVKRK RSFRSKRQTP ALSLEEIEAA DALLLLSGCF DKTSAYEDCY LGDIEDSSLR  180
SIVLTEVNMN AVDRCSVRSV GSKEPINDNN SGYKDCYGQS DKENCLIVPK EEMDPNDFDH  240
ELVRDAALRK PRTDNSDEEM KFGDLPAAAM KDNSHRCNTC GKSFGSGQAL GGHMRRHYVR  300
KCNRQRGVAD RTGSVLMKVQ KLKLRLDPIL FDVTLPALTD GDCCISVGVK PEPQLWCVTS  360
NLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0202700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9287740.0AL928774.3 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619008.10.0uncharacterized protein LOC4352630 isoform X1
TrEMBLI1R9210.0I1R921_ORYGL; Uncharacterized protein
STRINGORGLA12G0202700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-08C2H2 family protein