PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA12G0199900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 25124.2 Da PI: 7.8031 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00071 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F + L H +H ORGLA12G0199900.1 91 HRCSVCGKAFASYQALGGHKASH 113 79**********99998888877 PP | |||||||
2 | zf-C2H2 | 11 | 0.0014 | 157 | 176 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ Cgk F++ L H ORGLA12G0199900.1 157 HECNVCGKAFPTGQALGGHK 176 78*********988886665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.023 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.56E-10 | 91 | 113 | No hit | No description |
PROSITE profile | PS50157 | 11.365 | 91 | 118 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.7E-13 | 91 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.56E-10 | 152 | 179 | No hit | No description |
Pfam | PF13912 | 2.5E-13 | 156 | 181 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 157 | 179 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.6E-5 | 157 | 179 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.388 | 157 | 179 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 159 | 179 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MAVEAVLEAS RSSSEEEAEV IVTHGGGGGG GGGGGQVEGW GKRKRSRRRR PQLPPSEEEY 60 LALCLLMLAR GRRDGDDVAA SAAAAAAAVE HRCSVCGKAF ASYQALGGHK ASHRKPPPPP 120 PAMVDDDEVV VETKPAAIAT PSSSASGVSG GGGGRAHECN VCGKAFPTGQ ALGGHKRCHY 180 DGTIGSAAGA GASKPAAKTT VAVAASRGFD LNLPALPDVA AAADQRCAAE DDEVLSPLAF 240 KKPRLMIPA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA12G0199900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY219847 | 0.0 | AY219847.1 Oryza sativa Japonica Group zinc finger protein ZFP252 mRNA, complete cds. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620192.1 | 1e-114 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 3e-46 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | I1R8Z3 | 1e-176 | I1R8Z3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA12G0199900.1 | 1e-176 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 1e-26 | C2H2 family protein |