PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0197400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 538aa    MW: 57546.9 Da    PI: 7.4023
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0197400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31268324259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  ORGLA12G0197400.1 268 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 324
                        8**************************************99.***************8 PP
2WRKY1079.6e-34424482159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  ORGLA12G0197400.1 424 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHIERASSDPKAVITTYEGKHNHE 482
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-28264326IPR003657WRKY domain
SuperFamilySSF1182902.88E-25266326IPR003657WRKY domain
SMARTSM007742.5E-34267325IPR003657WRKY domain
PROSITE profilePS5081123.192268326IPR003657WRKY domain
PfamPF031061.6E-24268324IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36410484IPR003657WRKY domain
SuperFamilySSF1182902.62E-29416484IPR003657WRKY domain
PROSITE profilePS5081137.413419484IPR003657WRKY domain
SMARTSM007741.1E-39424483IPR003657WRKY domain
PfamPF031064.2E-26425482IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MSARPPPPPR PRLALPPRSA AESLFTGAGD ASPGPLTLAS ALFPSDPDGG GGGGVMTSSS  60
SSAAGATSFT QLLIGNLSAP PPPPPPPQQQ QREAARGGGV ARAGPALSVA PPPAAGSVFT  120
VPPGLSPSGL LDSPGLLFSP AMFDAFDVLD MFIPDKILPK RATRIKLDIY FVKTSPEGGF  180
GMSHREALAQ VTAQASHSPL RMFDHTEQPS FSAAPTSSEA MQHMNAAVNM TGISDMVMGP  240
TNNENVAFQP AEASQRYQVN APVDKPADDG YNWRKYGQKV VKGSDCPRSY YKCTHPNCPV  300
KKKVEHAEDG QISEIIYKGK HNHQRPPNKR AKDGSSSAAD QNEQSNDTTS GLSGIKRDQE  360
AIYGMSEQLS GLSEGDDMDD GESRPHEADD KESDSKKRNI QISSQRTSAE AKIIVQTTSE  420
VDLLDDGYRW RKYGQKVVKG NPHPRSYYKC TYAGCNVRKH IERASSDPKA VITTYEGKHN  480
HEPPVGRGNN QNAGNAAPSS SAQQNMQNLS SNQASLTMAD FNNINQRPIG VLQFKSEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-38258484877Probable WRKY transcription factor 4
2lex_A2e-38258484877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0197400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317590.0AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620542.10.0probable WRKY transcription factor 3
TrEMBLI1R8W80.0I1R8W8_ORYGL; Uncharacterized protein
STRINGORGLA12G0197400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-105WRKY DNA-binding protein 3