PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0161900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 297aa    MW: 30870.8 Da    PI: 8.8686
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0161900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.54.9e-34431821112
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssa 82 
                        aag+kdrhsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+ieWL+++a +ai++l+++          ss+++  + +++++s++
  ORGLA12G0161900.1  43 AAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSLdcsfalpaaaSSPPP-PAADDAEVSTS 133
                        6899***************************************************************9999877533333.22333333333 PP

                TCP  83 snsssg...................kaaksaakskksqksaasalnlak 112
                        ++s+s+                    ++++++ sk+ q++++++l++ +
  ORGLA12G0161900.1 134 ETSKSSvlslanapcdngggafaelLHCSNTNGSKPLQQQQQATLAYYA 182
                        3333336777788888999999999555555533333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3245173IPR005333Transcription factor, TCP
PROSITE profilePS5136931.67846104IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEEVVGGGKE RKRPRGALVG VGGGGASAAT AAAWRTSRVA RAAAGGKDRH SKVVTSRGLR  60
DRRVRLSVPT AIAFYDIQDR LGVDQPSKAI EWLIRAAAAA IDALPSLDCS FALPAAASSP  120
PPPAADDAEV STSETSKSSV LSLANAPCDN GGGAFAELLH CSNTNGSKPL QQQQQATLAY  180
YAAAQSAHMA APMSFEMMAM PPHLAFSQEQ QQHATVAAFD RGTLQSNASL WPPPPQPPPS  240
QHPFLLQRFA AAPAEVAGLP FFLAGGVGGA AAAAPAATTN GGERRLQLWD FKEERKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2151105155Putative transcription factor PCF6
5zkt_B1e-2151105155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0161900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004570.0BX000457.2 Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877606.10.0transcription factor PCF8
SwissprotA2ZMR90.0PCF8_ORYSI; Transcription factor PCF8
TrEMBLI1R7W30.0I1R7W3_ORYGL; Uncharacterized protein
STRINGORGLA12G0161900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.23e-20TCP family protein