PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA12G0159400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 297aa MW: 32057.2 Da PI: 9.4783 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.1 | 1.5e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +++++G g W+tI + R+ ++k++w++ ORGLA12G0159400.1 5 KQKWTAEEESALKAGIAKHGAGKWRTILKDPDfsnvlRYRSNVDLKDKWRN 55 79***********************************99***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.732 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-15 | 2 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-13 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 8.90E-20 | 6 | 57 | No hit | No description |
SuperFamily | SSF46785 | 1.47E-15 | 115 | 195 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 7.3E-11 | 116 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 2.0E-14 | 117 | 188 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 23.123 | 118 | 186 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 3.4E-8 | 123 | 179 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MGAPKQKWTA EEESALKAGI AKHGAGKWRT ILKDPDFSNV LRYRSNVDLK DKWRNMNVTV 60 NASGARDRVK APVVKKPRSA PKHEGHSTST AIAAVTSDGD DDVAEPVPLA TSTSSKRSLS 120 RLDNIIVEAV RSLNEPTGSY KTAIANYIEE QYWPPADFDH VLSSKLNDLT ASGKLIKVNR 180 KYRIAPSSSL SEGRSSKVVL LEDIKKEPTK LDREDVAVLT KSQIDAELAR MRTMTAEEAA 240 AAAARAVAEA EAIMAEAEAA VREAEAAEAD AVAAQAFAEA AMATFKNRSS AKLIIRA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA12G0159400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100618 | 0.0 | AK100618.1 Oryza sativa Japonica Group cDNA clone:J023108E10, full insert sequence. | |||
GenBank | FJ940211 | 0.0 | FJ940211.1 Oryza sativa Japonica Group clone KCS061C09 Myb-like DNA binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620817.1 | 0.0 | single myb histone 6 | ||||
Refseq | XP_015620818.1 | 0.0 | single myb histone 6 | ||||
Refseq | XP_025877961.1 | 0.0 | single myb histone 6 | ||||
Swissprot | C0HIA3 | 1e-108 | SMH6_MAIZE; Single myb histone 6 | ||||
TrEMBL | I1R7T8 | 0.0 | I1R7T8_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q2QM89 | 0.0 | Q2QM89_ORYSJ; Myb-like DNA binding domain containing protein | ||||
STRING | OS12T0613300-02 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA12G0159400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1324 | 38 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 7e-63 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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