PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0157700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 172aa    MW: 18082.1 Da    PI: 8.5504
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0157700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.55.3e-14731125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       C+gCr++L YPrGApsV+Ca+C++V
  ORGLA12G0157700.1  7 CHGCRNILLYPRGAPSVCCAVCHAV 31
                       ************************9 PP
2zf-LSD148.41.5e-154771125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       CggCrtlL+Y+r+A+sVRC++CdtV
  ORGLA12G0157700.1 47 CGGCRTLLMYTRNATSVRCSCCDTV 71
                       ************************9 PP
3zf-LSD150.92.5e-1685109125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+C+t+L+YP+GApsV+Ca+C+++
  ORGLA12G0157700.1  85 CGQCQTVLMYPYGAPSVKCAICNFI 109
                        ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.8E-12431IPR005735Zinc finger, LSD1-type
PfamPF069433.8E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.3E-154474IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-124771IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.4E-1182110IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-1485109IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGM DIAHLICGGC RTLLMYTRNA  60
TSVRCSCCDT VNLVRPVSSI AHLNCGQCQT VLMYPYGAPS VKCAICNFIT NTGMNTMRHL  120
PPNGTSYTVP STSAPTTQSQ NVTVVVENPM TVDAKGKLVS NVVVGVTTGG KK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0157700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118370.0AK111837.1 Oryza sativa Japonica Group cDNA clone:J023139G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620418.11e-121protein LOL2
SwissprotQ2QMB31e-122LOL2_ORYSJ; Protein LOL2
TrEMBLI1R7S11e-120I1R7S1_ORYGL; Uncharacterized protein
STRINGORGLA12G0157700.11e-121(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-51LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]