PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA12G0157500.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 333aa MW: 36333.2 Da PI: 8.9766

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA12G0157500.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.9	8.3e-53	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhP+d+el+++yL++kv+gk ++ + + +vd++kvePwdLp+ ++ + kewyfFs rd+kyatg+r+nrat sgyWkatgkd+ ORGLA12G0157500.1 14 LPPGFRFHPRDDELICDYLAPKVAGKVgFSGRRPpMVDVDLNKVEPWDLPEVASVGGKEWYFFSMRDRKYATGQRTNRATVSGYWKATGKDR 105 79**********************986665656***********8888899******************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v + +g+lvg++ktLvfy+grapkg+kt+Wvmheyr+ ORGLA12G0157500.1 106 VVAR-RGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRM 142 9999.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.55E-60	2	167	IPR003441	NAC domain
PROSITE profile	PS51005	55.966	14	167	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	15	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSMMSFLSMV EAELPPGFRF HPRDDELICD YLAPKVAGKV GFSGRRPPMV DVDLNKVEPW 60 DLPEVASVGG KEWYFFSMRD RKYATGQRTN RATVSGYWKA TGKDRVVARR GALVGMRKTL 120 VFYQGRAPKG RKTEWVMHEY RMEGVHDQQA SSFSSKEDWV LCRVICKRKS GGGATSKSRS 180 LTTTTTTIVH DTSTPTSSPP LPPLMDTTLA QLQASMNTSS SSAIAAVAAL EQVPCFSSFS 240 NSIASNNNNS NSATVNAQQC YLPIVTGSNN NGMSYLDHGL AEFGSFLDTQ SCDKKMLKAV 300 LSQLNSIGGE VLPGLPPPSE MAAAVSSSWM NHF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-51	10	168	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA12G0157500.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071464	0.0	AK071464.1 Oryza sativa Japonica Group cDNA clone:J023097O13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620576.1	0.0	NAC domain-containing protein 21/22 isoform X2
Swissprot	Q84TE6	3e-89	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A0D3HWL9	0.0	A0A0D3HWL9_9ORYZ; Uncharacterized protein
TrEMBL	I1R7R9	0.0	I1R7R9_ORYGL; Uncharacterized protein
STRING	ORGLA12G0157500.1	0.0	(Oryza glaberrima)
STRING	OBART12G18490.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10022	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	4e-80	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]