PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0150100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 661aa    MW: 75236.4 Da    PI: 8.4611
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0150100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-1515931498
                       T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       + + +p kfa+ + g+   s  ++le ++g++++v++   k  ++ vl++GW  F+++ +Lk+ D++vF+++g+s+f  +v++f+
  ORGLA12G0150100.1 15 DFVAVPTKFANFIRGQ--ISEVVKLEVPNGKTYDVQV--AKEHNELVLRSGWGAFARDYELKQCDILVFTYSGSSRF--KVRIFN 93
                       56789*****999777..6779***************..*********************************99999..999987 PP
2B339.59.8e-132122881698
                        EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         ++ k fa++  g     s   +le ++g++++v++  +k  ++ v+++GW+ F+ a +L++gD++ F ++g+s f  +v++f+
  ORGLA12G0150100.1 212 KTILKMFAKNVqG-L--ISGVAKLEVPDGKTYDVEI--SKEHNELVFRSGWEVFAIAYELEQGDILAFGYSGNSHF--KVQIFN 288
                        4788999977744.4..35579**************..**********************************9999..999987 PP
3B337.15.5e-12445524989
                        HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                 B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                         + +sg lv++k++a ++ ++  +++t++l ++ g ++W++ l  +   +  y l++GW +F + n L+egD++vF+ + + ++
  ORGLA12G0150100.1 445 TSVASGSLVFSKDYAVRYLLD--QNRTIKLCQSGGsKTWDISL--DMDTDDlYALSTGWLDFFRGNLLQEGDICVFEASMSkRG 524
                        4556778***********888..4558888887777*******..8888888*************************7644244 PP
4B337.73.5e-125716571399
                        TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                        + r +++ k+a+++   k +   ++l+  e+  + +  l ++ + + + l kGW +Fv++n+L+  D+++F+l+++ ++ +++v+++rk
  ORGLA12G0150100.1 571 QERKCFSVKYASKYLPHKDQ--NMRLRLpETKYKCKAALHIDTSTNLHKLLKGWGKFVNDNKLEIHDICLFQLMKNkKKLTMTVHIIRK 657
                        45677888999999433334..5666663455677777777999999***************************999*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.364295IPR003340B3 DNA binding domain
SuperFamilySSF1019361.43E-20397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-19597IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-7895IPR003340B3 DNA binding domain
CDDcd100176.33E-201093No hitNo description
PfamPF023629.5E-131493IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-16198292IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-5201290IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-16202292IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-10213288IPR003340B3 DNA binding domain
CDDcd100171.54E-14216288No hitNo description
PROSITE profilePS5086310.278232290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-14430533IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15431536IPR015300DNA-binding pseudobarrel domain
CDDcd100176.07E-12436533No hitNo description
PROSITE profilePS5086311.251437535IPR003340B3 DNA binding domain
SMARTSM010192.3E-4439535IPR003340B3 DNA binding domain
PfamPF023623.0E-9445525IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-13556658IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-16558660IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0061560658IPR003340B3 DNA binding domain
PfamPF023628.0E-11569657IPR003340B3 DNA binding domain
CDDcd100172.42E-10571656No hitNo description
PROSITE profilePS508638.614618658IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MGDQKRSFIN VMIGDFVAVP TKFANFIRGQ ISEVVKLEVP NGKTYDVQVA KEHNELVLRS  60
GWGAFARDYE LKQCDILVFT YSGSSRFKVR IFNPSGCEKE LSCVMMNNTP CGHEGSMSYH  120
DNHLQSPSES SLLFNISLPP HSPFQELSGV DSTSLLVSDP TNMQQFCLRC SWTNPKRLAK  180
PSLAIASLSH QHLAFDKTRC MFILKIENDT LKTILKMFAK NVQGLISGVA KLEVPDGKTY  240
DVEISKEHNE LVFRSGWEVF AIAYELEQGD ILAFGYSGNS HFKVQIFNPS NCEKELSCVV  300
MNRSISDDNH RQSPRRERMN KPSTTCMDCI TNHYWLHMDD RERYFFKVMM SVSDIKDELA  360
IPKKFAANVR GKIPEQVRLE VSDDVPSSED IKDPMSSGGL QKSKKSCYVL PMLYNMTSAQ  420
EAEVLALEKK IQPQIPLYIT AMDKTSVASG SLVFSKDYAV RYLLDQNRTI KLCQSGGSKT  480
WDISLDMDTD DLYALSTGWL DFFRGNLLQE GDICVFEASM SKRGVALTFH PFKESHCPKS  540
SEYTLSTKSP TRRVPKRDYF ATNLTNLTDQ QERKCFSVKY ASKYLPHKDQ NMRLRLPETK  600
YKCKAALHID TSTNLHKLLK GWGKFVNDNK LEIHDICLFQ LMKNKKKLTM TVHIIRKGEC  660
S
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0150100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419930.0AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ2QMT70.0Y1214_ORYSJ; B3 domain-containing protein Os12g0591400
TrEMBLI1R7J50.0I1R7J5_ORYGL; Uncharacterized protein
STRINGORGLA12G0150100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-15B3 family protein