PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0148200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 401aa    MW: 41893.7 Da    PI: 8.3463
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0148200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.4e-32252307156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+peLH+rFv a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  ORGLA12G0148200.1 252 KARRCWSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 307
                        68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.583249309IPR017930Myb domain
SuperFamilySSF466894.21E-17250310IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-29250310IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-26252307IPR006447Myb domain, plants
PfamPF002493.3E-7254305IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGSSSASAAQ REEAAAAAAF VLGGVDMRML AARTATGALA RAGGGEAAAA AAAARFEDCI  60
RSLEAEKAKM EVFRRELPIS VHLIADVIEW LKDEVEKQRL LRRRQVEAPA AAPPPEMFAP  120
PATAKRKSAA SAAAEGVKAE ADANDKRSWM SSAQLWSCGS HTSTSTSNGG SVKKQQHKVS  180
NAFMPLATSP AFAKSLEKAD AATPLPAAVP DLSLSSRVAM ADAPAFPAAP SATSSAVTDV  240
AGAQRQQAVQ RKARRCWSPE LHRRFVAALQ RLGGPQAATP KQIRELMKVD GLTNDEVKSH  300
LQKYRLHTRR ASDGGGGGGD HQTVGGGLWP PPPEQYTTSQ HSTSQSGSPQ GPLQLTVSSS  360
HAVSVTAGDS CDGGEEEEEE DGKSGSYSWE MQNGARASSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-14252305255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0148200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-157CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618787.10.0transcription factor HHO6
TrEMBLI1R7H60.0I1R7H6_ORYGL; Uncharacterized protein
STRINGORGLA12G0148200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-28G2-like family protein