PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0141600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 245aa    MW: 28158.2 Da    PI: 8.3864
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0141600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-171060148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                       +g+WT++Ed++lv+ v+++G ++W+ Ia+  g   ++Rt+k+c++rw +yl
  ORGLA12G0141600.1 10 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGlrgLNRTGKSCRLRWVNYL 60
                       79***********************************************97 PP

2Myb_DNA-binding54.72.3e-1766111148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  ORGLA12G0141600.1  66 RGRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 111
                        89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.608560IPR017930Myb domain
SuperFamilySSF466892.02E-299107IPR009057Homeodomain-like
SMARTSM007174.9E-15962IPR001005SANT/Myb domain
PfamPF002495.2E-161060IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-191167IPR009057Homeodomain-like
CDDcd001673.68E-111260No hitNo description
PROSITE profilePS5129425.55261115IPR017930Myb domain
SMARTSM007172.2E-1665113IPR001005SANT/Myb domain
PfamPF002494.5E-1566110IPR001005SANT/Myb domain
CDDcd001676.70E-1268111No hitNo description
Gene3DG3DSA:1.10.10.609.9E-2468114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS GLRGLNRTGK SCRLRWVNYL  60
HPGLKRGRMS PHEERLILEL HARWGNRWSR IARRLPGRTD NEIKNYWRTH MRKKAQERKS  120
NMSPSSSSSS LTYQSCHPET PSMIIGIEEQ ELHGGSGCIT SIMKSTPVDM DGYPMDQIWM  180
EIEAPNVLPG PCFDEAKDSA SNSLSGPLLP YPMWDYYCPE TCLRMDDEIK VAPQFGYGKG  240
VGPCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-28101154105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-28101154105C-Myb DNA-Binding Domain
1msf_C6e-28101154105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0141600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332820.0CT833282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877776.11e-164myb-related protein MYBAS2 isoform X2
SwissprotQ4JL761e-167MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLI1R7B00.0I1R7B0_ORYGL; Uncharacterized protein
STRINGORGLA12G0141600.10.0(Oryza glaberrima)
STRINGORGLA12G0206100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.37e-68myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]