PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0120900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 412aa    MW: 43792.5 Da    PI: 6.9276
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0120900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-153683148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
  ORGLA12G0120900.1 36 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 83
                       678*******************************************97 PP

2Myb_DNA-binding50.45e-1689132146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++
  ORGLA12G0120900.1  89 RGAFSPQEEDLIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 132
                        89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3143183IPR017930Myb domain
SuperFamilySSF466892.3E-2834130IPR009057Homeodomain-like
SMARTSM007178.7E-113585IPR001005SANT/Myb domain
PfamPF002492.9E-133683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-223790IPR009057Homeodomain-like
CDDcd001673.69E-93983No hitNo description
PROSITE profilePS5129424.86784138IPR017930Myb domain
SMARTSM007172.4E-1588136IPR001005SANT/Myb domain
PfamPF002491.1E-1489132IPR001005SANT/Myb domain
CDDcd001676.99E-1191131No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2591138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MRKPDCGGGG GAAKGGGALG VAGGNNAAVV GGKVRKGLWS PEEDEKLVAY MLRSGQGSWS  60
DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEDLI VSLHAILGNR WSQIAARLPG  120
RTDNEIKNFW NSTIKKRLKI SSSSASPATT TDCASPPEHK LGAVVDLAGG GGGGGATDDV  180
VVGTANAAMK SMWVDSSSSS SSSSSSMQSR PSIMAAAAAG RSYGGLLPLP DQVCGVDTSP  240
PPPFFHDHSI SIKQAYYGST GAHHHHHAIA AMDGSSLIGD HHHHSSSILF GGASVPPLLD  300
HQTILNDDDD HPNKTGSNTT AATLSSNITD NSNSNKNNSD NNNNISSSCC ISLMNSSSNM  360
IYWEGHHQQQ QQQHQMLLQQ QQHMSRNVMG EWDLEELMKD VSSLPFLDFQ VE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28361387108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0120900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340840.0JN634084.1 Oryza sativa Japonica Group secondary wall MYB46 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619488.10.0transcription factor MYB83
TrEMBLI1R6Q30.0I1R6Q3_ORYGL; Uncharacterized protein
STRINGORGLA12G0120900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-64myb domain protein 46