PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA12G0120900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 412aa MW: 43792.5 Da PI: 6.9276 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.6 | 3.8e-15 | 36 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+lv + + G g+W+ +ar g+ R++k+c++rw +yl ORGLA12G0120900.1 36 KGLWSPEEDEKLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 83 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5e-16 | 89 | 132 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++ ORGLA12G0120900.1 89 RGAFSPQEEDLIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 132 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.314 | 31 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.3E-28 | 34 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-11 | 35 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 36 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-22 | 37 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.69E-9 | 39 | 83 | No hit | No description |
PROSITE profile | PS51294 | 24.867 | 84 | 138 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 88 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 89 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.99E-11 | 91 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 91 | 138 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MRKPDCGGGG GAAKGGGALG VAGGNNAAVV GGKVRKGLWS PEEDEKLVAY MLRSGQGSWS 60 DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEDLI VSLHAILGNR WSQIAARLPG 120 RTDNEIKNFW NSTIKKRLKI SSSSASPATT TDCASPPEHK LGAVVDLAGG GGGGGATDDV 180 VVGTANAAMK SMWVDSSSSS SSSSSSMQSR PSIMAAAAAG RSYGGLLPLP DQVCGVDTSP 240 PPPFFHDHSI SIKQAYYGST GAHHHHHAIA AMDGSSLIGD HHHHSSSILF GGASVPPLLD 300 HQTILNDDDD HPNKTGSNTT AATLSSNITD NSNSNKNNSD NNNNISSSCC ISLMNSSSNM 360 IYWEGHHQQQ QQQHQMLLQQ QQHMSRNVMG EWDLEELMKD VSSLPFLDFQ VE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 36 | 138 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00336 | DAP | Transfer from AT3G08500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA12G0120900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN634084 | 0.0 | JN634084.1 Oryza sativa Japonica Group secondary wall MYB46 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619488.1 | 0.0 | transcription factor MYB83 | ||||
TrEMBL | I1R6Q3 | 0.0 | I1R6Q3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA12G0120900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9821 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 4e-64 | myb domain protein 46 |