PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0092600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 420aa    MW: 45260.3 Da    PI: 7.5228
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0092600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.14.3e-20111352128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          GfrF+P+ e +v++yL   v+g++  ++e +i+++d+y + eP+dL  k    +++++ + +fF+  ++ +    + +r++  g+W ++ 
  ORGLA12G0092600.1  11 ELGFRFNPSPEHVVTYYLPCLVAGQQpKDTEGCIHSADVYGAdEPRDLAgKyapVARSSNGHRFFFTGCRRMKG---KFSRSAGGGTWVSQS 99 
                        57**********************994445556*******9869****84355433445558899999999764...7999999*****886 PP

                NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + k++++++g ++g  k + f     ++g++tdW+m+ey+l
  ORGLA12G0092600.1 100 S-KDLKNREGIKIGEVKNFRFK----KDGKNTDWLMEEYHL 135
                        6.888888*************7....78899********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-219154IPR003441NAC domain
PROSITE profilePS5100523.30510154IPR003441NAC domain
PfamPF023652.3E-1313135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEKGKLDFLL ELGFRFNPSP EHVVTYYLPC LVAGQQPKDT EGCIHSADVY GADEPRDLAG  60
KYAPVARSSN GHRFFFTGCR RMKGKFSRSA GGGTWVSQSS KDLKNREGIK IGEVKNFRFK  120
KDGKNTDWLM EEYHLCGQES GDVVEPVVCR IYVSPRAAPD SVAHQESAVL QPQEPAPLPV  180
PAAPAPPRQV PVVTQQAPPP PPPLVPVITQ DAPPLKRPAP VAAPPCAKKM RGDVSAFPVV  240
RQSCVAAPRC APRVVAPPPR HPPIQTYPTD PFESAPLDPF EPPPAAASVT GGHHTPQPSV  300
PVPATPEQGL SLAASNSPEL DPANIGIDMD ELMRYLGNTP LDGVLPSQLF VLPTNDDEDV  360
ELAKVLHRNT RRRRKGRQWQ STAVCDSTSS SSATGILARH GATAASSTHP DLSKDPFEPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0092600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317850.0AL731785.2 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL7318830.0AL731883.4 Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619211.20.0uncharacterized protein LOC107275392
TrEMBLI1R5X00.0I1R5X0_ORYGL; Uncharacterized protein
STRINGORGLA12G0092600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.13e-11NAC domain containing protein 52