PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0089800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 119aa    MW: 12847.8 Da    PI: 9.7483
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0089800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.45.9e-211360249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        i+nk +rqvtf+kRr g++KKA+EL  L +a +av++fs+t+  y +
  ORGLA12G0089800.1 13 HIDNKERRQVTFTKRRGGLFKKASELALLAGASIAVVVFSETNLAYAF 60
                       69****************************************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.18464IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-21578IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-14626IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-19963IPR002100Transcription factor, MADS-box
PfamPF003194.4E-211460IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-142641IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-144162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MRPLGRTSKG RQHIDNKERR QVTFTKRRGG LFKKASELAL LAGASIAVVV FSETNLAYAF  60
GDPSVDAVLL SYGPVPGEDA EPAPVHSGGL GKDVDLEMLR RNNCASSLQF VLVSLSFIM
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0089800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139421e-165AL713942.4 Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-165AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877889.17e-67LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL62
TrEMBLI1R5U22e-81I1R5U2_ORYGL; Uncharacterized protein
STRINGORGLA12G0089800.14e-82(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-18AGAMOUS-like 62