PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0041500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 396aa    MW: 42907.4 Da    PI: 4.6108
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0041500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.55.9e-3110122722125
                TCP  22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaaksaa.kskksqksaa 105
                        +R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++       + ++s ssasn++ ++  ++ a +++++q++ +
  ORGLA12G0041500.1 101 IRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSslnisirSGAASASSASNPNRASPFPALAlHPHHQQHDVS 192
                        9************************************************8876666666556666666666666666666668888888888 PP

                TCP 106 salnlakesr...............akarararer 125
                        ++l ++++                 a a +r+r+r
  ORGLA12G0041500.1 193 AMLGYHHHLLpppqqqqespqdpggAGAFMRKRYR 227
                        88888875445666666666666555555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.8451141IPR017887Transcription factor TCP subgroup
PfamPF036345.0E-28101198IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX IRMPALCAAR VFQLTRELGH  120
KSDGETIEWL LQQAEPAIIA ATGTGTIPAN FSSLNISIRS GAASASSASN PNRASPFPAL  180
ALHPHHQQHD VSAMLGYHHH LLPPPQQQQE SPQDPGGAGA FMRKRYREDL FKEDDDRQDP  240
SAPKAREQQP TTPQAAAAAA AAAMWAVAPN TAAPGGAFWM LPVSASSAAA ARPTEQPMWS  300
FAAGGGGAAT VQAPLQFMST RVNYPGSAGA GMSDTNLGML AALNAYNRGG AGDQQPQQQP  360
EMDQQGRNDD DDDDGDDSGD EDNGGANNNN NNNSSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0041500.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139330.0AL713933.6 Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618822.11e-145transcription factor PCF3-like
SwissprotQ53PH22e-62PCF3_ORYSJ; Transcription factor PCF3
TrEMBLI1R4F90.0I1R4F9_ORYGL; Uncharacterized protein
STRINGORGLA12G0041500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-32TCP family protein