PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0190400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 642aa    MW: 72128.6 Da    PI: 6.5811
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0190400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.31.2e-1062646382373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lLl+cA+av+++d + a++lL ++++++s  gd+ qRla++f+++L+arla+++s++y++l +++ts   +++ l+a++l+ e++ + k+
  ORGLA11G0190400.1 264 HNLLLHCAQAVATDDRRSAHELLRQIKQHSSAWGDAGQRLAHCFAQGLEARLAGTGSQVYQSLMSQRTS---VVDFLKAYRLYMEACCCKKV 352
                        689************************************************************999999...******************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        +++  N++I++av g +++Hi+D+++s+G+QWp Ll++La+R++gpp++RiTg++ p++g    + +eetg+rL+++A+elgvpf+f+ ++a
  ORGLA11G0190400.1 353 AFVFSNKTIYDAVTGRRKLHIVDYGLSYGFQWPGLLRELAARRGGPPEVRITGIDLPQPGfrPDQHIEETGRRLSRYADELGVPFKFHGIAA 444
                        ***********************************************************9*99***************************99 PP

               GRAS 184 krledleleeLrvkp.gEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                        ++ e+++leeL   + +E+++V +  +  +++des++ +s   +rdevL  +++++P+v+++   +  ++++ Fl+rf eal+yy+a fd l
  ORGLA11G0190400.1 445 TKKESVRLEELGEAEeDEVVVVISLCHFRNVMDESLQEDSsrsPRDEVLGNIRRMRPDVFIHGIMNGAYGATYFLTRFREALYYYAAQFDLL 536
                        9**********77766******************9988777779************************************************ PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        +a+++res+er+ vEr ++gr++ nv+acegaer+er e +++W++r ++aG++++pl+ +++  +   +r  + + + v+e++ +l+  Wk
  ORGLA11G0190400.1 537 DATVGRESHERMLVERDIFGRAALNVIACEGAERVERPEMYKQWQARNQRAGLRQLPLNPQVVRLVLDKVRDKYHKDFVVDEDQRWLLHRWK 628
                        ********************************************************************999999888*************** PP

               GRAS 364 drpLvsvSaW 373
                        +r L+++S W
  ORGLA11G0190400.1 629 GRVLYALSTW 638
                        ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.085237619IPR005202Transcription factor GRAS
PfamPF035144.2E-104264638IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MATTPEAEES LRFRWPAAEE EFDNDMVLPY ISRLLMEDDV HDHFFYQYPD HPALLRAQQP  60
FAQILASSPS SAAGASSSSS SSDAPPSRPF FDDEAATAKT FPTAAVHSVD HQYSGGLDMV  120
NMAFLKGMEE ANKFLPTNTL LLSTDSSTTL QLQVQGEVVV DGHGMLGGVG GAAAAHAHGA  180
INSKKVNCRD DDLEAGTGRA TKLMAPEPEL EEEGARQMFD EMMLQEHEIC MKGVKQLSLK  240
SKSSSSKKAR GRRTVIHTEP VDLHNLLLHC AQAVATDDRR SAHELLRQIK QHSSAWGDAG  300
QRLAHCFAQG LEARLAGTGS QVYQSLMSQR TSVVDFLKAY RLYMEACCCK KVAFVFSNKT  360
IYDAVTGRRK LHIVDYGLSY GFQWPGLLRE LAARRGGPPE VRITGIDLPQ PGFRPDQHIE  420
ETGRRLSRYA DELGVPFKFH GIAATKKESV RLEELGEAEE DEVVVVISLC HFRNVMDESL  480
QEDSSRSPRD EVLGNIRRMR PDVFIHGIMN GAYGATYFLT RFREALYYYA AQFDLLDATV  540
GRESHERMLV ERDIFGRAAL NVIACEGAER VERPEMYKQW QARNQRAGLR QLPLNPQVVR  600
LVLDKVRDKY HKDFVVDEDQ RWLLHRWKGR VLYALSTWVA QH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4126963925379Protein SCARECROW
5b3h_A2e-4126963924378Protein SCARECROW
5b3h_D2e-4126963924378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0190400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616926.10.0scarecrow-like protein 14
TrEMBLI1R2B20.0I1R2B2_ORYGL; Uncharacterized protein
STRINGORGLA11G0190400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-134GRAS family protein