PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA11G0188100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 171aa MW: 18044.5 Da PI: 10.8738 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++Fs+ L H +H ORGLA11G0188100.1 45 FQCRTCGRRFSTFQALGGHRTSH 67 89**********99998888877 PP | |||||||
2 | zf-C2H2 | 18.4 | 5.9e-06 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk+F + L H+r+H ORGLA11G0188100.1 102 HRCDMCGKVFATGQALGGHMRRH 124 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.1E-4 | 37 | 68 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 8.2E-10 | 44 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.866 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.78E-9 | 45 | 67 | No hit | No description |
SMART | SM00355 | 0.13 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.78E-9 | 97 | 124 | No hit | No description |
Pfam | PF13912 | 3.1E-12 | 101 | 125 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.471 | 102 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0028 | 102 | 124 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.5E-4 | 102 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEVATNTTTR SPVKLMLVLT LSPASKVIAK GGGGVKRVHL DGGAFQCRTC GRRFSTFQAL 60 GGHRTSHKRP RVRADGLDLL LGARPGKLGA GGGGGASTPV VHRCDMCGKV FATGQALGGH 120 MRRHRPLVSR NGTMSTTWTA AAAAATMSGS SSEERDDDDD DVHNYNFIHF L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA11G0188100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY305866 | 0.0 | AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616529.1 | 7e-91 | zinc finger protein ZAT8 | ||||
TrEMBL | I1R289 | 1e-121 | I1R289_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0188100.1 | 1e-121 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 3e-21 | C2H2 family protein |