PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA11G0188000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 18852.1 Da PI: 6.9414 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F+++ L H +H ORGLA11G0188000.1 74 FECRTCGRRFPSHQALGGHRTSH 96 89*************99998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 7.3E-10 | 73 | 98 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.91E-7 | 74 | 136 | No hit | No description |
SMART | SM00355 | 0.092 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.325 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.099 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.3E-9 | 114 | 138 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MDQQEDYTSD LQLELEEEDD DNQLSQLAEL DVQLSLSLAC GSTTAMSSSG DEEDAEPRRR 60 KRRHRRRDEE AAAFECRTCG RRFPSHQALG GHRTSHLRPT TNKRRPGPSK PLIHACEVCG 120 LGFQMGQALG GHMRRHRPRN IDLGHKQIIM PEVRPNSTLQ LLDLFV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 60 | PRRRK |
2 | 57 | 65 | RRRKRRHRR |
3 | 59 | 67 | RKRRHRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA11G0188000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134045 | 0.0 | AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence. | |||
GenBank | AK243307 | 0.0 | AK243307.1 Oryza sativa Japonica Group cDNA, clone: J100055D19, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616383.1 | 7e-82 | zinc finger protein ZAT1 | ||||
TrEMBL | I1R288 | 1e-118 | I1R288_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0188000.1 | 1e-118 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 1e-16 | C2H2 family protein |