PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0175900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 386aa    MW: 42707.7 Da    PI: 6.5059
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0175900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.32.7e-201053245
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       + en+s r+vt+skRr gilKKA+ELS+LCd+   +++fs+++k
  ORGLA11G0175900.1 10 KLENSSGRHVTYSKRRSGILKKAKELSILCDIPLILLMFSPNDK 53
                       679*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.254153IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-24290IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-15323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-171154IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRVKLKIKK LENSSGRHVT YSKRRSGILK KAKELSILCD IPLILLMFSP NDKPTICVGD  60
HSSIEDVITK YAQQTPQERA KRKLESLEXX XXXXKKLDHD VNIQDFLGSG GQTVEMLIKS  120
IVWQELSSHL GALQCQMADV EKRLSYWSDP EKVENIDHIR AMEQSLKESL NRIRIHKENF  180
AKQHLMSLQC AAAQFQNDMQ LPLGLTGDPN TSSWFHGGGG AEAQQPMMLP EDPSLLHQRD  240
IGCSASTSLQ SYPGYFSMGK QSTDNAGGGE QHHHAAVQQQ PEFSQADCLT SLQLGVQFPY  300
PSAFDNAGLL SDRLFDNAAA AAAAMDFGGH YDLPRPGDEA SFQNWASAAC GATMYDHQQQ  360
QQPLPAAATV EAPSFNHPSP HRQLMI
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0175900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM9565050.0FM956505.1 Oryza sativa Japonica Group mRNA for MADS68 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618002.10.0agamous-like MADS-box protein AGL65 isoform X1
TrEMBLI1R1W70.0I1R1W7_ORYGL; Uncharacterized protein
STRINGORGLA11G0175900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46263659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.17e-78AGAMOUS-like 65