PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA11G0161400.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 101aa MW: 10995.6 Da PI: 7.3656

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA11G0161400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.2e-08	23	63	15	54
HHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 ++ + +++L+ +lP++ ++ + K s ae+L++A++YI+ L ORGLA11G0161400.1 23 QMAELISKLQAVLPTRGGEANAKqASSAEVLQEACRYIRRL 63 78899********777777787*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-7	22	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-5	23	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-7	23	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MSSSRRSRTS SRLAAAPPPT DEQMAELISK LQAVLPTRGG EANAKQASSA EVLQEACRYI 60 RRLHREADAL SERLAELLLL QPSDLAINGA DVPDLIRSLL M

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA11G0161400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111303	1e-171	AK111303.1 Oryza sativa Japonica Group cDNA clone:002-181-B06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616700.1	6e-65	transcription factor ILI2 isoform X1
Swissprot	B8BLA3	5e-66	ILI2_ORYSI; Transcription factor ILI2
Swissprot	Q2R1J3	5e-66	ILI2_ORYSJ; Transcription factor ILI2
TrEMBL	I1R1H2	1e-63	I1R1H2_ORYGL; Uncharacterized protein
STRING	OS11T0603000-01	2e-64	(Oryza sativa)
STRING	ORGLA11G0161400.1	2e-64	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17004	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39860.1	7e-12	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]