PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA11G0125800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 126aa MW: 14516.7 Da PI: 7.8589 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 27 | 1.2e-08 | 11 | 65 | 32 | 86 |
NAM 32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 ++i+++di++++P d+ + +++++ +fF++++kk++ ++ +n a++ g+W+++ ORGLA11G0125800.1 11 DFITDIDILHHNPLDIVPTRQEKKNGKHFFTRKEKKHHGDNCRNHAADVGFWRKS 65 679*************63445667799*********99999999999*****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-10 | 6 | 85 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MAGPQMSLPY DFITDIDILH HNPLDIVPTR QEKKNGKHFF TRKEKKHHGD NCRNHAADVG 60 FWRKSSFAES MEWAMQEFQL AGSYLLPCFV MRFATSDGTE QPFGCTRVTI ANMRHCILTP 120 YCCFIG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA11G0125800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136150 | 1e-104 | AC136150.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0023F12, complete sequence. | |||
GenBank | AP014967 | 1e-104 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 1e-104 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015697669.1 | 8e-25 | PREDICTED: NAC transcription factor NAM-B1-like | ||||
TrEMBL | I1R0G6 | 4e-92 | I1R0G6_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0125800.1 | 6e-93 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP52985 | 2 | 2 |